SMTL ID : 3uy4.1

Crystal Structure of Pantoate--Beta-Alanine Ligase from Campylobacter jejuni complexed with AMP and vitamin B5

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

2 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 17 residues within 4Å: Chain A: P.31, T.32, M.33, H.37, G.39, H.40, L.43, Y.73, M.148, G.149, K.151, D.152, P.176, I.177, I.178, K.186 Ligands: PAU.2 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:Y.73, A:G.149, A:D.152, A:D.152, A:D.152, A:I.178, A:K.186, A:K.186 Water bridges: A:H.40, A:Y.73, A:Q.155, A:Q.155 Salt bridges: A:H.40 AMP.4: 17 residues within 4Å: Chain B: P.31, T.32, M.33, H.37, G.39, H.40, L.43, Y.73, M.148, G.149, K.151, D.152, P.176, I.177, I.178, K.186 Ligands: PAU.5 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:Y.73, B:Y.73, B:G.149, B:D.152, B:D.152, B:I.178, B:K.186, B:K.186 Water bridges: B:H.40, B:Q.155, B:Q.155 Salt bridges: B:H.40

2 x PAU: PANTOTHENOIC ACID(Non-covalent)

PAU.2: 13 residues within 4Å: Chain A: P.31, T.32, M.33, Q.63, R.123, H.126, V.130, V.133, M.148, D.152, Q.155, R.189 Ligands: AMP.1 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Q.63, A:Q.63, A:Q.155 Water bridges: A:R.123, A:R.123, A:R.189 Salt bridges: A:R.123, A:H.126, A:R.189 PAU.5: 13 residues within 4Å: Chain B: P.31, T.32, M.33, Q.63, R.123, H.126, V.130, V.133, M.148, D.152, Q.155, R.189 Ligands: AMP.4 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:Q.63, B:Q.63, B:Q.155 Water bridges: B:R.123, B:R.123, B:R.189 Salt bridges: B:R.123, B:H.126, B:R.189

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: H.37, D.38, R.79, M.83, K.186 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.38, A:D.38, A:R.79 GOL.6: 5 residues within 4Å: Chain B: H.37, D.38, R.79, M.83, K.186 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.38, B:D.38, B:R.79

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of Pantoate--Beta-Alanine Ligase from Campylobacter jejuni complexed with AMP and vitamin B5. To be Published

Release Date

2011-12-28

Peptides

Pantothenate synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Pantothenate synthetase

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