SMTL ID : 3v1l.1

Crystal Structure of the S112A/H265Q mutant of a C-C hydrolase, BphD from Burkholderia xenovorans LB400

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

homo-tetramer

Ligands

4 x MLA: MALONIC ACID(Non-covalent)

MLA.1: 7 residues within 4Å: Chain A: E.34, T.35, R.65, D.102, I.103, D.104, R.105 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:T.35, A:D.104, A:R.105, A:R.105, A:R.105 Water bridges: A:E.34, A:R.65, A:R.65 Salt bridges: A:R.65 MLA.2: 7 residues within 4Å: Chain B: E.34, T.35, R.65, D.102, I.103, D.104, R.105 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:T.35, B:T.35, B:D.104, B:R.105, B:R.105, B:R.105 Water bridges: B:R.65, B:R.65 Salt bridges: B:R.65 MLA.3: 7 residues within 4Å: Chain C: E.34, T.35, R.65, D.102, I.103, D.104, R.105 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:T.35, C:D.104, C:R.105, C:R.105, C:R.105 Water bridges: C:E.34, C:R.65, C:R.65 Salt bridges: C:R.65 MLA.4: 7 residues within 4Å: Chain D: E.34, T.35, R.65, D.102, I.103, D.104, R.105 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:T.35, D:T.35, D:D.104, D:R.105, D:R.105, D:R.105 Water bridges: D:R.65, D:R.65 Salt bridges: D:R.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ruzzini, A.C. et al., Identification of an Acyl-Enzyme Intermediate in a meta-Cleavage Product Hydrolase Reveals the Versatility of the Catalytic Triad. J.Am.Chem.Soc. (2012)

Release Date

2012-03-21

Peptides

2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase

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