SMTL ID : 3v48.1

Crystal Structure of the putative alpha/beta hydrolase RutD from E.coli

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: G.23, L.24, G.25, H.89, L.150 Ligands: SCN.3, SCN.4 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.23, A:L.24, A:G.25, A:G.26, A:H.89, A:H.239 GOL.2: 6 residues within 4Å: Chain A: M.156, A.157, A.160, L.163 Chain B: H.122, R.125 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:H.122, B:R.125, A:A.157 Water bridges: B:H.122 GOL.5: 6 residues within 4Å: Chain B: G.23, L.24, G.25, H.89, L.150, H.239 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.23, B:G.25, B:Q.146, B:H.239 Water bridges: B:Q.146 GOL.6: 7 residues within 4Å: Chain A: H.122, R.125 Chain B: M.156, A.157, R.159, A.160, L.163 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.122, A:R.125

3 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.3: 7 residues within 4Å: Chain A: L.24, G.25, R.130, W.142, Q.146, Q.175 Ligands: GOL.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.130, A:Q.146 Water bridges: A:R.130 SCN.4: 7 residues within 4Å: Chain A: L.24, A.90, L.91, L.187, L.213, H.239 Ligands: GOL.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.239 SCN.7: 3 residues within 4Å: Chain B: R.159, P.161, R.162 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Knapik, A.A. et al., A multi-faceted analysis of RutD reveals a novel family of alpha / beta hydrolases. Proteins (2012)

Release Date

2012-01-04

Peptides

Putative aminoacrylate hydrolase RutD: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative aminoacrylate hydrolase RutD