SMTL ID : 3v4r.1

Crystal structure of a UvrB dimer-DNA complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.25 Å

Oligo State

homo-dimer

Ligands

2 x DA- DC- DT- DG- DT- DT- DT: DNA: 5 -TACTGTTT-3(Non-covalent)

DA-DC-DT-DG-DT-DT-DT.1: 24 residues within 4Å: Chain B: H.71, N.72, K.73, V.96, S.97, Y.98, Y.99, Y.102, S.147, V.148, S.149, Y.152, G.153, L.154, G.155, E.313, Q.352, M.356, R.363, S.483, N.509, R.512, F.533, L.534 Protein-ligand interaction information (PLIP) not available DA-DC-DT-DG-DT-DT-DT.2: 22 residues within 4Å: Chain A: N.72, K.73, V.96, S.97, Y.98, Y.99, R.129, S.147, V.148, S.149, Y.152, G.153, L.154, G.155, E.313, Q.352, M.356, S.483, I.508, N.509, F.533, L.534 Protein-ligand interaction information (PLIP) not available

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.3: 13 residues within 4Å: Chain A: Y.17, Q.18, Q.20, Q.23, G.48, T.49, G.50, K.51, T.52, F.53, E.82, F.86, R.549 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:Q.20, A:Q.23, A:Q.23, A:G.48, A:G.50, A:K.51, A:T.52, A:T.52 Salt bridges: A:R.549 pi-Stacking: A:Y.17 ADP.4: 5 residues within 4Å: Chain B: T.47, G.48, G.50, K.51, T.52 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.48, B:K.51, B:T.52, B:T.52, B:T.52, B:T.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Webster, M.P. et al., Crystal structure of the UvrB dimer: insights into the nature and functioning of the UvrAB damage engagement and UvrB-DNA complexes. Nucleic Acids Res. (2012)

Release Date

2012-07-04

Peptides

UvrABC system protein B: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

UvrABC system protein B