SMTL ID : 3v9p.1 (2 other biounits)

Crystal structure of Thymidylate kinase from Burkholderia thailandensis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.1: 8 residues within 4Å: Chain A: E.65, M.93, R.97, F.120, A.123, T.124, Y.127, Q.128 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:E.65, A:A.123, A:Y.127 Hydrogen bonds: A:R.97, A:Q.128

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: F.204, V.205, I.206, Q.219 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.206, A:Q.219 GOL.3: 5 residues within 4Å: Chain A: S.209, E.211, P.212, I.213, I.216 1 PLIP interactions: 1 interactions with chain A Water bridges: A:I.213

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 8 residues within 4Å: Chain A: R.64, E.65, P.66, G.67, G.68, G.72, G.96, R.97 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:E.65 Hydrogen bonds: A:R.64, A:G.67, A:G.68, A:T.69 Water bridges: A:G.72 Salt bridges: A:H.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baugh, L. et al., Combining functional and structural genomics to sample the essential Burkholderia structome. Plos One (2013)

Release Date

2012-01-25

Peptides

Thymidylate kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Thymidylate kinase

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