SMTL ID : 3vbo.3 (4 other biounits)

Crystal structure of formaldehyde treated empty human Enterovirus 71 particle (cryo at 100K)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.88 Å

Oligo State

hetero-6-6-6-mer

Ligands

6 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: Q.189 Chain C: V.20 Chain F: P.8 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:V.20 NA.2: 2 residues within 4Å: Chain D: Q.189 Chain F: V.20 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:V.20 NA.3: 2 residues within 4Å: Chain G: Q.189 Chain I: V.20 1 PLIP interactions: 1 interactions with chain I Hydrogen bonds: I:V.20 NA.4: 3 residues within 4Å: Chain I: P.8 Chain J: Q.189 Chain L: V.20 1 PLIP interactions: 1 interactions with chain L Hydrogen bonds: L:V.20 NA.5: 3 residues within 4Å: Chain M: Q.189 Chain O: V.20 Chain R: P.8 1 PLIP interactions: 1 interactions with chain O Hydrogen bonds: O:V.20 NA.6: 2 residues within 4Å: Chain P: Q.189 Chain R: V.20 1 PLIP interactions: 1 interactions with chain R Hydrogen bonds: R:V.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, X. et al., A sensor-adaptor mechanism for enterovirus uncoating from structures of EV71. Nat.Struct.Mol.Biol. (2012)

Release Date

2012-02-29

Peptides

Genome Polyprotein, capsid protein VP1: ADGJMP
Genome Polyprotein, capsid protein VP2: BEHKNQ
Genome Polyprotein, capsid protein VP3: CFILOR

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
A

G
A

J
A

M
A

P
A

B
B

E
B

H
B

K
B

N
B

Q
B

C
C

F
C

I
C

L
C

O
C

R
C

Genome Polyprotein, capsid protein VP1

Genome Polyprotein, capsid protein VP2

Genome Polyprotein, capsid protein VP3

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