SMTL ID : 3vim.1 (1 other biounit)

Crystal structure of beta-glucosidase from termite Neotermes koshunensis in complex with a new glucopyranosidic product

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.03 Å

Oligo State

monomer

Ligands

1 x GBH: 2-{4-[2-(beta-D-glucopyranosyloxy)ethyl]piperazin-1-yl}ethanesulfonic acid(Non-covalent)

GBH.1: 14 residues within 4Å: Chain A: Q.26, H.129, W.130, N.173, D.174, T.177, N.234, Y.318, W.355, E.383, W.425, E.432, W.433, F.441 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:Q.26, A:Q.26, A:H.129, A:N.173, A:D.174 Water bridges: A:D.174, A:N.316, A:S.353, A:S.353, A:N.430, A:R.435

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: N.284, D.287, E.288, E.331, R.336 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.288, A:E.331, A:E.331, A:R.336

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 2 residues within 4Å: Chain A: K.160, N.161 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.160, A:N.161 Water bridges: A:K.160, A:N.161

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jeng, W.Y. et al., High-resolution structures of Neotermes koshunensis beta-glucosidase mutants provide insights into the catalytic mechanism and the synthesis of glucoconjugates. Acta Crystallogr.,Sect.D (2012)

Release Date

2012-07-04

Peptides

Beta-glucosidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-glucosidase

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