SMTL ID : 3vkw.1

Crystal Structure of the Superfamily 1 Helicase from Tomato Mosaic Virus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: G.173, K.174, T.175, K.176, R.203 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:T.175, A:T.175, A:T.175, A:K.176 Water bridges: A:G.171, A:K.174, A:K.174, A:R.203, A:R.203, A:R.203 Salt bridges: A:R.203 SO4.2: 3 residues within 4Å: Chain A: K.176, L.179, R.203 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.176 Salt bridges: A:K.176, A:R.203 SO4.3: 7 residues within 4Å: Chain A: P.170, G.171, K.174, Q.271, R.303, G.379, R.411 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.171, A:Q.271 Water bridges: A:K.174, A:G.379 Salt bridges: A:K.174, A:R.303, A:R.411 SO4.4: 5 residues within 4Å: Chain A: R.277, Q.357, T.373, H.375, E.376 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Q.357, A:E.376, A:E.376 Water bridges: A:Q.357, A:Q.357, A:H.375, A:H.375 Salt bridges: A:R.277, A:H.375 SO4.5: 1 residues within 4Å: Chain A: R.202 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.202 SO4.6: 2 residues within 4Å: Chain A: R.277, H.375 4 PLIP interactions: 4 interactions with chain A Water bridges: A:I.275, A:H.375 Salt bridges: A:R.277, A:H.375 SO4.7: 5 residues within 4Å: Chain A: S.10, L.11, E.12, R.145, R.149 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.11, A:E.12 Salt bridges: A:R.145, A:R.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nishikiori, M. et al., Crystal structure of the superfamily 1 helicase from tomato mosaic virus. J.Virol. (2012)

Release Date

2012-07-11

Peptides

Replicase large subunit: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Replicase large subunit