SMTL ID : 3vmw.1

Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x ADA- ADA- ADA: alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid

ADA-ADA-ADA.1: 9 residues within 4Å: Chain A: N.205, S.206, R.207, L.210, D.228, R.234, P.256, K.262, Y.269 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.207 Water bridges: A:S.149, A:S.206, A:R.212, A:Y.269 Salt bridges: A:R.207, A:R.212, A:R.234

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: D.153, K.177, H.183, R.207 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.207, A:R.207 Salt bridges: A:K.177, A:H.183, A:R.207 SO4.3: 1 residues within 4Å: Chain A: R.238 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.238 SO4.4: 3 residues within 4Å: Chain A: K.159, R.160, H.183 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:K.159, A:R.160, A:H.183 SO4.5: 3 residues within 4Å: Chain A: K.69, G.73, K.74 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.74 Water bridges: A:A.75 Salt bridges: A:K.69 SO4.6: 3 residues within 4Å: Chain A: N.11, H.103, K.130 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.11 Salt bridges: A:H.103, A:K.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zheng, Y. et al., Crystal structure and substrate-binding mode of a novel pectate lyase from alkaliphilic Bacillus sp. N16-5. Biochem.Biophys.Res.Commun. (2012)

Release Date

2012-07-25

Peptides

Pectate lyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Pectate lyase

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