SMTL ID : 3vn4.1 (1 other biounit)

Crystal structure of the exosite-containing fragment of human ADAMTS13 (P475S mutant)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: N.330, R.345, V.346, L.348 No protein-ligand interaction detected (PLIP)

1 x FUC- BGC: beta-D-glucopyranose-(1-3)-alpha-L-fucopyranose(Post Translational Modification)

FUC-BGC.2: 7 residues within 4Å: Chain A: R.114, S.115, C.116, C.154, K.156, F.161, Q.164 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.114, A:R.114, A:Q.164, A:Q.164 Water bridges: A:S.115, A:S.115

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 2 residues within 4Å: Chain A: D.267, N.268 No protein-ligand interaction detected (PLIP)

1 x BMA: beta-D-mannopyranose(Post Translational Modification)

BMA.4: 4 residues within 4Å: Chain A: R.102, W.103, R.125, V.140 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.102, A:R.102, A:W.103, A:W.103, A:R.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakayama, D. et al., Structural analysis and biochemical studies of ADAMTS13 P475S mutant. To be Published

Release Date

2012-12-26

Peptides

A disintegrin and metalloproteinase with thrombospondin motifs 13: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

A disintegrin and metalloproteinase with thrombospondin motifs 13

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