SMTL ID : 3vqs.2 (3 other biounits)

Crystal structure of HCV NS5B RNA polymerase with a novel piperazine inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x JT1: (2R)-4-(5-CYCLOPROPYL[1,3]THIAZOLO[4,5-D]PYRIMIDIN-2-YL)-N-[3-FLUORO-4-(TRIFLUOROMETHOXY)BENZYL]-1-{[4-(TRIFLUOROMETHYL)PHENYL]SULFONYL}PIPERAZINE-2-CARBOXAMIDE(Non-covalent)

JT1.1: 27 residues within 4Å: Chain A: V.179, Y.191, G.192, F.193, Y.195, S.196, P.197, R.200, S.288, C.289, N.316, C.366, S.368, L.384, I.413, M.414, Y.415, I.447, Y.448, A.450, Y.452, I.454, I.462, L.466, L.547, Y.555, S.556 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:V.179, A:I.413, A:I.447, A:Y.448, A:Y.452, A:L.466, A:L.466, A:L.547, A:Y.555 Hydrogen bonds: A:Y.195, A:S.288, A:Y.452 Water bridges: A:S.556 pi-Cation interactions: A:R.200 Halogen bonds: A:M.414

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain A: T.92, P.93, S.96, R.168, K.172 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ando, I. et al., Preclinical Characterization of JTK-853, a Novel Nonnucleoside Inhibitor of the Hepatitis C Virus RNA-Dependent RNA Polymerase. Antimicrob.Agents Chemother. (2012)

Release Date

2012-08-08

Peptides

RNA-directed RNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

RNA-directed RNA polymerase

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