SMTL ID : 3vsw.5 (4 other biounits)

Human renin in complex with compound 8

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-trimer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.75, M.107 No protein-ligand interaction detected (PLIP) NAG.3: 2 residues within 4Å: Chain B: N.75, M.107 No protein-ligand interaction detected (PLIP) NAG.5: 2 residues within 4Å: Chain C: N.75, M.107 No protein-ligand interaction detected (PLIP)

3 x R31: (2S,4S,5S)-5-amino-N-(3-amino-2,2-dimethyl-3-oxopropyl)-4-hydroxy-6-{4-[2-(3-methoxypropoxy)phenyl]-3-oxopiperazin-1-yl}-2-(propan-2-yl)hexanamide(Non-covalent)

R31.2: 27 residues within 4Å: Chain A: T.18, Q.19, Y.20, V.36, D.38, G.40, S.41, R.82, Y.83, S.84, T.85, P.118, F.119, L.121, A.122, F.124, Q.135, I.137, Y.162, L.224, D.226, T.227, G.228, A.229, S.230, I.305, T.309 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:Q.19, A:P.118, A:P.118, A:F.119, A:A.122, A:I.137, A:I.305, A:I.305, A:T.309 Hydrogen bonds: A:Y.20, A:D.38, A:D.38, A:G.40, A:S.84, A:T.85 Salt bridges: A:D.38 pi-Stacking: A:F.124 pi-Cation interactions: A:Y.83 R31.4: 27 residues within 4Å: Chain B: T.18, Q.19, Y.20, V.36, D.38, G.40, S.41, R.82, Y.83, S.84, T.85, P.118, F.119, L.121, A.122, F.124, Q.135, I.137, Y.162, L.224, D.226, T.227, G.228, A.229, S.230, I.305, T.309 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:Q.19, B:P.118, B:P.118, B:F.119, B:A.122, B:I.137, B:I.305, B:I.305, B:T.309 Hydrogen bonds: B:Y.20, B:D.38, B:D.38, B:G.40, B:S.84 Salt bridges: B:D.38 pi-Stacking: B:F.124 pi-Cation interactions: B:Y.83 R31.6: 27 residues within 4Å: Chain C: T.18, Q.19, Y.20, V.36, D.38, G.40, S.41, R.82, Y.83, S.84, T.85, P.118, F.119, L.121, A.122, F.124, Q.135, I.137, Y.162, L.224, D.226, T.227, G.228, A.229, S.230, I.305, T.309 17 PLIP interactions: 17 interactions with chain C Hydrophobic interactions: C:Q.19, C:P.118, C:P.118, C:F.119, C:A.122, C:I.137, C:I.305, C:I.305, C:T.309 Hydrogen bonds: C:Y.20, C:D.38, C:D.38, C:G.40, C:S.84 Salt bridges: C:D.38 pi-Stacking: C:F.124 pi-Cation interactions: C:Y.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakamura, Y. et al., Design and optimization of novel (2S,4S,5S)-5-amino-6-(2,2-dimethyl-5-oxo-4-phenylpiperazin-1-yl)-4-hydroxy-2-isopropylhexanamides as renin inhibitors. Bioorg.Med.Chem.Lett. (2012)

Release Date

2012-07-25

Peptides

Renin: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

C
B

Renin

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