SMTL ID : 3vta.2 (1 other biounit)

Crystal Structure of cucumisin, a subtilisin-like endoprotease from Cucumis melo L

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- MAN- FUC: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose(Covalent)

NAG-NAG-BMA-MAN-FUC.1: 9 residues within 4Å: Chain A: K.223, N.311, T.312, R.313, D.314, I.354, N.356, F.455, P.457 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.311, A:R.313, A:R.313, A:R.454, A:R.313 Water bridges: A:R.368, A:Q.458

1 x NAG- FUC- NAG: alpha-L-fucopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-FUC-NAG.2: 4 residues within 4Å: Chain A: D.521, Y.540, N.542, T.586 No protein-ligand interaction detected (PLIP)

1 x DFP: DIISOPROPYL PHOSPHONATE(Covalent)

DFP.3: 9 residues within 4Å: Chain A: H.94, S.163, V.164, G.165, S.194, N.197, S.412, T.414, S.415 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.197 Salt bridges: A:H.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Murayama, K. et al., Crystal structure of cucumisin, a subtilisin-like endoprotease from Cucumis melo L. J.Mol.Biol. (2012)

Release Date

2012-08-08

Peptides

Cucumisin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Cucumisin

Related Entries With Identical Sequence