- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x W70: 2,6-dioxo-5-[2-(4-phenoxyphenyl)ethyl]-1,2,3,6- tetrahydropyrimidine-4-carboxylic acid(Non-covalent)
- 12 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 3 residues within 4Å:- Chain A: C.32, A.35, S.36
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:C.32
- Water bridges: A:P.280
GOL.3: 5 residues within 4Å:- Chain A: K.215, Q.216, F.218
- Chain B: I.172, R.240
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:Q.216, B:R.240, B:R.240
GOL.4: 3 residues within 4Å:- Chain A: F.62, I.203, D.204
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.204, A:D.204
GOL.5: 2 residues within 4Å:- Chain A: Y.238, P.242
No protein-ligand interaction detected (PLIP)GOL.6: 4 residues within 4Å:- Chain A: K.224, Y.253, D.257
- Chain B: L.64
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.224, A:D.257
GOL.7: 3 residues within 4Å:- Chain A: V.108, A.109, R.112
No protein-ligand interaction detected (PLIP)GOL.8: 5 residues within 4Å:- Chain A: G.21, V.22, L.23, D.29, Q.276
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:L.23, A:Q.276
- Water bridges: A:C.24, A:C.24
GOL.9: 2 residues within 4Å:- Chain A: F.144, R.148
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:F.144, A:R.148, A:R.148
GOL.10: 4 residues within 4Å:- Chain A: K.224, Y.253, S.254, R.285
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.224, A:R.285
- Water bridges: A:R.285, A:E.289
GOL.14: 5 residues within 4Å:- Chain A: I.172, R.240
- Chain B: K.215, Q.216, F.218
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:Q.216, A:R.240, A:R.240
GOL.15: 3 residues within 4Å:- Chain B: Y.59, M.70, Q.276
3 PLIP interactions:3 interactions with chain B- Water bridges: B:R.58, B:Y.59, B:Y.59
GOL.16: 7 residues within 4Å:- Chain B: S.130, Q.139, P.167, N.195, S.196, G.198
- Ligands: W70.13
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:Q.139, B:S.196, B:G.198
- Water bridges: B:N.199
- 2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
FMN.11: 24 residues within 4Å:- Chain A: A.19, A.20, G.21, K.44, S.45, Y.59, S.66, N.68, M.70, N.128, K.165, V.194, N.195, S.196, G.222, G.223, I.226, C.249, G.250, G.251, V.271, G.272, T.273
- Ligands: W70.1
19 PLIP interactions:19 interactions with chain A- Hydrophobic interactions: A:Y.59, A:Y.59
- Hydrogen bonds: A:A.20, A:S.45, A:S.45, A:S.45, A:N.128, A:K.165, A:K.165, A:N.195, A:G.223, A:G.251, A:G.272, A:T.273, A:T.273
- Water bridges: A:K.44, A:S.98, A:V.252, A:A.274
FMN.17: 22 residues within 4Å:- Chain B: A.19, A.20, G.21, K.44, S.45, Y.59, N.68, M.70, N.128, K.165, V.194, N.195, S.196, G.222, G.223, I.226, C.249, G.250, G.251, G.272, T.273
- Ligands: W70.13
21 PLIP interactions:21 interactions with chain B- Hydrophobic interactions: B:Y.59, B:Y.59
- Hydrogen bonds: B:A.20, B:K.44, B:S.45, B:S.45, B:S.45, B:N.128, B:K.165, B:K.165, B:N.195, B:G.223, B:G.251, B:G.272, B:T.273, B:T.273
- Water bridges: B:A.20, B:G.250, B:G.250, B:V.252, B:V.252
- 1 x NCO: COBALT HEXAMMINE(III)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Inaoka, D.K. et al., Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-4-095. To be Published
- Release Date
- 2014-03-05
- Peptides
- Dihydroorotate dehydrogenase (fumarate): AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x W70: 2,6-dioxo-5-[2-(4-phenoxyphenyl)ethyl]-1,2,3,6- tetrahydropyrimidine-4-carboxylic acid(Non-covalent)
- 12 x GOL: GLYCEROL(Non-functional Binders)
- 2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
- 1 x NCO: COBALT HEXAMMINE(III)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Inaoka, D.K. et al., Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-4-095. To be Published
- Release Date
- 2014-03-05
- Peptides
- Dihydroorotate dehydrogenase (fumarate): AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B