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SMTL ID : 3w79.1
(1 other biounit)
Crystal Structure of azoreductase AzrC in complex with sulfone-modified azo dye Orange I
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.40 Å
Oligo State
homo-dimer
Ligands
2 x
FMN
:
FLAVIN MONONUCLEOTIDE
(Non-covalent)
FMN.1:
19 residues within 4Å:
Chain A:
N.10
,
S.17
,
F.18
,
G.19
,
P.101
,
M.102
,
W.103
,
N.104
,
F.105
,
A.146
,
T.147
,
G.148
,
G.149
,
Y.151
,
M.186
,
N.187
Chain B:
I.52
,
F.57
Ligands:
ORI.2
18
PLIP interactions
:
16 interactions with chain A
,
2 interactions with chain B
Hydrophobic interactions:
A:W.103
,
A:W.103
,
B:I.52
,
B:F.57
Hydrogen bonds:
A:N.10
,
A:F.18
,
A:G.19
,
A:M.102
,
A:M.102
,
A:N.104
,
A:F.105
,
A:G.148
,
A:G.149
,
A:Y.151
,
A:N.187
Water bridges:
A:S.17
,
A:S.17
pi-Stacking:
A:W.103
FMN.3:
19 residues within 4Å:
Chain A:
I.52
,
F.57
Chain B:
N.10
,
S.17
,
F.18
,
G.19
,
P.101
,
M.102
,
W.103
,
N.104
,
F.105
,
A.146
,
T.147
,
G.148
,
G.149
,
Y.151
,
M.186
,
N.187
Ligands:
ORI.4
19
PLIP interactions
:
17 interactions with chain B
,
2 interactions with chain A
Hydrophobic interactions:
B:W.103
,
B:W.103
,
A:I.52
,
A:F.57
Hydrogen bonds:
B:N.10
,
B:F.18
,
B:G.19
,
B:M.102
,
B:M.102
,
B:N.104
,
B:F.105
,
B:G.148
,
B:G.149
,
B:Y.151
,
B:Y.151
,
B:N.187
Water bridges:
B:S.17
,
B:S.17
pi-Stacking:
B:W.103
2 x
ORI
:
4-[(E)-(4-hydroxynaphthalen-1-yl)diazenyl]benzenesulfonic acid
(Non-covalent)
ORI.2:
8 residues within 4Å:
Chain A:
N.104
,
G.149
,
Y.151
,
A.188
Chain B:
F.125
,
Y.127
,
F.172
Ligands:
FMN.1
6
PLIP interactions
:
3 interactions with chain B
,
3 interactions with chain A
Hydrophobic interactions:
B:F.125
,
B:Y.127
,
B:F.172
Hydrogen bonds:
A:N.104
,
A:N.104
,
A:V.150
ORI.4:
10 residues within 4Å:
Chain A:
F.125
,
Y.127
,
P.132
,
F.172
Chain B:
N.104
,
G.149
,
V.150
,
Y.151
,
A.188
Ligands:
FMN.3
6
PLIP interactions
:
4 interactions with chain B
,
2 interactions with chain A
Hydrogen bonds:
B:N.104
,
B:N.104
,
B:V.150
,
B:Y.151
Hydrophobic interactions:
A:F.172
pi-Stacking:
A:Y.127
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Yu, J. et al., Structures of AzrA and of AzrC complexed with substrate or inhibitor: insight into substrate specificity and catalytic mechanism. Acta Crystallogr.,Sect.D (2014)
Release Date
2014-02-12
Peptides
FMN-dependent NADH-azoreductase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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Toggle Identical (AB)
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