- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x W7C: 5-[2-(5-methoxynaphthalen-2-yl)ethyl]-2,6-dioxo-1,2,3,6-tetrahydropyrimidine-4-carboxylic acid(Non-covalent)
- 17 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 4 residues within 4Å:- Chain A: Y.59, M.70, Q.276
- Ligands: GOL.9
Ligand excluded by PLIPGOL.3: 4 residues within 4Å:- Chain A: C.32, A.35, S.36, P.280
Ligand excluded by PLIPGOL.4: 5 residues within 4Å:- Chain A: I.172, R.239, R.240
- Chain B: K.215, F.218
Ligand excluded by PLIPGOL.5: 7 residues within 4Å:- Chain A: K.215, Q.216, F.218
- Chain B: I.172, R.239, R.240
- Ligands: GOL.10
Ligand excluded by PLIPGOL.6: 3 residues within 4Å:- Chain A: Y.238, R.239, P.242
Ligand excluded by PLIPGOL.7: 9 residues within 4Å:- Chain A: S.130, Q.139, P.167, P.168, N.195, S.196, G.198, G.220
- Ligands: W7C.1
Ligand excluded by PLIPGOL.8: 1 residues within 4Å:- Chain A: D.204
Ligand excluded by PLIPGOL.9: 3 residues within 4Å:- Chain A: T.26, D.29
- Ligands: GOL.2
Ligand excluded by PLIPGOL.10: 4 residues within 4Å:- Chain A: Q.216
- Chain B: R.239, R.240
- Ligands: GOL.5
Ligand excluded by PLIPGOL.11: 5 residues within 4Å:- Chain A: D.52, G.53, N.54, P.55, R.58
Ligand excluded by PLIPGOL.15: 8 residues within 4Å:- Chain B: S.130, Q.139, P.167, N.195, S.196, G.198, G.220
- Ligands: W7C.14
Ligand excluded by PLIPGOL.16: 3 residues within 4Å:- Chain B: Y.238, R.239, P.242
Ligand excluded by PLIPGOL.17: 2 residues within 4Å:- Chain B: N.183, P.242
Ligand excluded by PLIPGOL.18: 6 residues within 4Å:- Chain B: H.10, Y.90, K.93, P.94, K.121, G.122
Ligand excluded by PLIPGOL.19: 5 residues within 4Å:- Chain B: F.62, V.202, I.203, D.204, V.211
Ligand excluded by PLIPGOL.20: 6 residues within 4Å:- Chain A: I.312
- Chain B: D.204, S.207, S.209, V.210, V.211
Ligand excluded by PLIPGOL.21: 8 residues within 4Å:- Chain A: Y.142, F.170, H.174
- Chain B: Y.142, Y.169, F.170, D.171, H.174
Ligand excluded by PLIP- 2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
FMN.12: 22 residues within 4Å:- Chain A: A.19, A.20, G.21, K.44, S.45, Y.59, N.68, M.70, N.128, K.165, V.194, N.195, S.196, G.222, G.223, I.226, C.249, G.250, G.251, G.272, T.273
- Ligands: W7C.1
21 PLIP interactions:21 interactions with chain A- Hydrophobic interactions: A:Y.59, A:Y.59
- Hydrogen bonds: A:A.20, A:S.45, A:S.45, A:S.45, A:K.165, A:K.165, A:N.195, A:G.223, A:G.251, A:G.272, A:T.273, A:T.273
- Water bridges: A:A.20, A:S.98, A:S.98, A:G.250, A:V.252, A:V.252, A:V.252
FMN.22: 23 residues within 4Å:- Chain B: A.19, A.20, G.21, K.44, S.45, Y.59, S.66, N.68, M.70, N.128, K.165, V.194, N.195, S.196, G.222, G.223, I.226, C.249, G.250, G.251, G.272, T.273
- Ligands: W7C.14
20 PLIP interactions:20 interactions with chain B- Hydrophobic interactions: B:Y.59, B:Y.59
- Hydrogen bonds: B:A.20, B:S.45, B:S.45, B:S.45, B:K.165, B:K.165, B:N.195, B:G.223, B:G.251, B:G.272, B:T.273, B:T.273
- Water bridges: B:S.98, B:S.98, B:G.250, B:G.250, B:V.252, B:V.252
- 1 x NCO: COBALT HEXAMMINE(III)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Inaoka, D.K. et al., Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-5-077. To be Published
- Release Date
- 2014-03-05
- Peptides
- Dihydroorotate dehydrogenase (fumarate): AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x W7C: 5-[2-(5-methoxynaphthalen-2-yl)ethyl]-2,6-dioxo-1,2,3,6-tetrahydropyrimidine-4-carboxylic acid(Non-covalent)
- 17 x GOL: GLYCEROL(Non-functional Binders)
- 2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
- 1 x NCO: COBALT HEXAMMINE(III)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Inaoka, D.K. et al., Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-5-077. To be Published
- Release Date
- 2014-03-05
- Peptides
- Dihydroorotate dehydrogenase (fumarate): AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B