- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x W7G: 5-[2-(2-methoxyphenyl)ethyl]-2,6-dioxo-1,2,3,6-tetrahydropyrimidine-4-carboxylic acid(Non-covalent)
- 14 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 3 residues within 4Å:- Chain A: Y.59, M.70, Q.276
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:G.21
- Water bridges: A:L.23, A:R.58, A:Q.276
GOL.3: 4 residues within 4Å:- Chain A: L.5, N.6, E.303, R.306
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.6, A:R.306
GOL.4: 4 residues within 4Å:- Chain A: F.62, V.202, I.203, D.204
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.204, A:D.204
GOL.5: 4 residues within 4Å:- Chain A: Q.216
- Chain B: R.239, R.240
- Ligands: GOL.16
4 PLIP interactions:1 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:Q.216, B:R.239
- Water bridges: B:R.239, B:R.239
GOL.6: 3 residues within 4Å:- Chain A: D.176, T.177, A.180
3 PLIP interactions:3 interactions with chain A- Water bridges: A:D.176, A:T.177, A:A.180
GOL.7: 4 residues within 4Å:- Chain A: C.32, A.35, S.36, P.280
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:P.280
- Water bridges: A:S.37
GOL.8: 6 residues within 4Å:- Chain A: I.172, R.239, R.240
- Chain B: K.215, F.218
- Ligands: GOL.13
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:R.240, A:R.240
- Water bridges: B:Q.216
GOL.9: 2 residues within 4Å:- Chain A: Y.238, P.242
3 PLIP interactions:3 interactions with chain A- Water bridges: A:Y.238, A:K.244, A:K.244
GOL.13: 4 residues within 4Å:- Chain A: R.239, R.240
- Chain B: Q.216
- Ligands: GOL.8
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:R.239, B:Q.216
- Water bridges: A:R.239, A:R.240, A:R.240
GOL.14: 7 residues within 4Å:- Chain B: V.11, A.13, Y.90, S.91, K.92, P.94
- Ligands: GOL.18
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:A.13, B:Y.90
- Water bridges: B:H.10, B:V.11, B:K.92
GOL.15: 3 residues within 4Å:- Chain B: Y.59, M.70, Q.276
7 PLIP interactions:7 interactions with chain B- Water bridges: B:G.21, B:G.21, B:S.25, B:R.58, B:Y.59, B:Y.59, B:Q.276
GOL.16: 7 residues within 4Å:- Chain A: K.215, Q.216, F.218
- Chain B: I.172, R.239, R.240
- Ligands: GOL.5
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:R.240, B:R.240
- Water bridges: A:Q.216
GOL.17: 3 residues within 4Å:- Chain B: Y.238, R.239, P.242
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.239, B:P.242
- Water bridges: B:Y.238
GOL.18: 7 residues within 4Å:- Chain B: H.10, Y.90, K.93, P.94, K.121, G.122
- Ligands: GOL.14
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:K.93, B:G.122
- Water bridges: B:H.10, B:H.10
- 2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
FMN.10: 22 residues within 4Å:- Chain A: A.19, A.20, G.21, K.44, S.45, Y.59, N.68, M.70, N.128, K.165, V.194, N.195, G.222, G.223, I.226, C.249, G.250, G.251, V.271, G.272, T.273
- Ligands: W7G.1
21 PLIP interactions:21 interactions with chain A- Hydrophobic interactions: A:Y.59, A:Y.59
- Hydrogen bonds: A:A.20, A:S.45, A:S.45, A:S.45, A:K.165, A:K.165, A:N.195, A:G.223, A:G.251, A:G.272, A:T.273, A:T.273
- Water bridges: A:A.20, A:K.44, A:S.98, A:G.250, A:V.252, A:V.252, A:V.252
FMN.19: 23 residues within 4Å:- Chain B: A.19, A.20, G.21, K.44, S.45, Y.59, N.68, M.70, N.128, K.165, V.194, N.195, S.196, G.222, G.223, I.226, C.249, G.250, G.251, V.271, G.272, T.273
- Ligands: W7G.12
20 PLIP interactions:20 interactions with chain B- Hydrophobic interactions: B:Y.59, B:Y.59
- Hydrogen bonds: B:A.20, B:S.45, B:S.45, B:S.45, B:K.165, B:K.165, B:N.195, B:G.223, B:G.251, B:G.272, B:T.273, B:T.273
- Water bridges: B:A.20, B:S.98, B:G.250, B:G.250, B:V.252, B:V.252
- 1 x NCO: COBALT HEXAMMINE(III)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Inaoka, D.K. et al., Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-5-013. To be Published
- Release Date
- 2014-03-05
- Peptides
- Dihydroorotate dehydrogenase (fumarate): AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x W7G: 5-[2-(2-methoxyphenyl)ethyl]-2,6-dioxo-1,2,3,6-tetrahydropyrimidine-4-carboxylic acid(Non-covalent)
- 14 x GOL: GLYCEROL(Non-functional Binders)
- 2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
- 1 x NCO: COBALT HEXAMMINE(III)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Inaoka, D.K. et al., Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-5-013. To be Published
- Release Date
- 2014-03-05
- Peptides
- Dihydroorotate dehydrogenase (fumarate): AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B