- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.45 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 4 x MLA: MALONIC ACID(Non-covalent)
MLA.2: 9 residues within 4Å:- Chain A: Q.94, S.142, H.144, K.152, Y.155, W.187, L.192, Q.196
- Ligands: NAD.1
10 PLIP interactions:10 interactions with chain A- Hydrophobic interactions: A:W.187, A:L.192
- Hydrogen bonds: A:Q.94, A:S.142, A:Y.155, A:Q.196
- Water bridges: A:A.143
- Salt bridges: A:H.144, A:H.144, A:K.152
MLA.6: 9 residues within 4Å:- Chain B: Q.94, S.142, H.144, K.152, Y.155, W.187, L.192, Q.196
- Ligands: NAD.5
10 PLIP interactions:10 interactions with chain B- Hydrophobic interactions: B:W.187, B:L.192
- Hydrogen bonds: B:Q.94, B:S.142, B:Y.155, B:Q.196
- Water bridges: B:A.143
- Salt bridges: B:H.144, B:H.144, B:K.152
MLA.10: 9 residues within 4Å:- Chain C: Q.94, S.142, H.144, K.152, Y.155, W.187, L.192, Q.196
- Ligands: NAD.9
11 PLIP interactions:11 interactions with chain C- Hydrophobic interactions: C:W.187, C:L.192
- Hydrogen bonds: C:Q.94, C:S.142, C:Y.155, C:Y.155, C:Q.196
- Water bridges: C:A.143
- Salt bridges: C:H.144, C:H.144, C:K.152
MLA.14: 9 residues within 4Å:- Chain D: Q.94, S.142, H.144, K.152, Y.155, W.187, L.192, Q.196
- Ligands: NAD.13
11 PLIP interactions:11 interactions with chain D- Hydrophobic interactions: D:W.187, D:L.192
- Hydrogen bonds: D:Q.94, D:S.142, D:Y.155, D:Y.155, D:Q.196
- Water bridges: D:A.143
- Salt bridges: D:H.144, D:H.144, D:K.152
- 4 x NA: SODIUM ION(Non-functional Binders)
NA.3: 5 residues within 4Å:- Chain A: V.147, R.260
- Chain D: V.147, R.260
- Ligands: NA.15
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:R.260
NA.7: 5 residues within 4Å:- Chain B: V.147, R.260
- Chain C: V.147, R.260
- Ligands: NA.11
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:R.260
NA.11: 5 residues within 4Å:- Chain B: V.147, R.260
- Chain C: V.147, R.260
- Ligands: NA.7
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:R.260
NA.15: 5 residues within 4Å:- Chain A: V.147, R.260
- Chain D: V.147, R.260
- Ligands: NA.3
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:R.260
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.4: 3 residues within 4Å:- Chain D: S.149, V.150, K.219
Ligand excluded by PLIPCL.8: 3 residues within 4Å:- Chain C: S.149, V.150, K.219
Ligand excluded by PLIPCL.12: 3 residues within 4Å:- Chain B: S.149, V.150, K.219
Ligand excluded by PLIPCL.16: 3 residues within 4Å:- Chain A: S.149, V.150, K.219
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kanazawa, H. et al., X-ray diffraction of D-3-hydroxybutyrate dehydrogenase from Alcaligenes faecalis complexed with NAD+ and malonate. To be Published
- Release Date
- 2014-03-12
- Peptides
- D-3-hydroxybutyrate dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.45 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 4 x MLA: MALONIC ACID(Non-covalent)
- 4 x NA: SODIUM ION(Non-functional Binders)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kanazawa, H. et al., X-ray diffraction of D-3-hydroxybutyrate dehydrogenase from Alcaligenes faecalis complexed with NAD+ and malonate. To be Published
- Release Date
- 2014-03-12
- Peptides
- D-3-hydroxybutyrate dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A