SMTL ID : 3w9w.2 (1 other biounit)

Crystal structure of DING protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 10 residues within 4Å: Chain A: A.7, T.8, L.9, G.31, S.32, D.61, R.140, S.144, G.145, T.146 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:T.8, A:T.8, A:L.9, A:S.32, A:S.144, A:S.144, A:G.145, A:T.146, A:T.146 Salt bridges: A:R.140

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: L.179, L.182, A.183, G.184, A.185 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.182, A:G.184, A:A.185 Water bridges: A:Y.139, A:Y.139 GOL.3: 8 residues within 4Å: Chain A: V.259, P.260, L.261, P.262, V.272, P.275, G.284, V.286 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.272 Water bridges: A:A.263 GOL.4: 5 residues within 4Å: Chain A: F.97, R.98, L.198, N.199, K.228 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.97 Water bridges: A:N.199 GOL.5: 5 residues within 4Å: Chain A: D.1, N.309, T.311, Q.312, Q.376 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.1, A:D.1, A:T.311 Water bridges: A:D.1, A:N.309, A:Q.312, A:Q.315

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gai, Z.Q. et al., Crystal structure analysis, overexpression and refolding behaviour of a DING protein with single mutation. J.SYNCHROTRON RADIAT. (2013)

Release Date

2013-10-30

Peptides

DING protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

DING protein

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