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SMTL ID : 3wfj.1
(3 other biounits)
The complex structure of D-mandelate dehydrogenase with NADH
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.80 Å
Oligo State
homo-dimer
Ligands
2 x
NAD
:
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
(Non-covalent)
NAD.1:
18 residues within 4Å:
Chain A:
G.9
,
A.10
,
M.11
,
D.30
,
W.32
,
H.35
,
F.77
,
T.78
,
K.79
,
Q.82
,
L.104
,
N.105
,
W.129
,
T.130
,
A.131
,
L.133
,
R.270
,
E.273
17
PLIP interactions
:
17 interactions with chain A
Hydrogen bonds:
A:A.10
,
A:M.11
,
A:D.30
,
A:T.78
,
A:Q.82
,
A:N.105
,
A:N.105
,
A:A.131
,
A:A.131
,
A:R.270
,
A:E.273
Salt bridges:
A:K.79
,
A:K.79
,
A:R.270
pi-Stacking:
A:W.32
,
A:W.32
pi-Cation interactions:
A:R.270
NAD.2:
19 residues within 4Å:
Chain B:
G.7
,
G.9
,
A.10
,
M.11
,
D.30
,
W.32
,
F.77
,
T.78
,
K.79
,
Q.82
,
L.104
,
N.105
,
W.129
,
T.130
,
A.131
,
L.133
,
K.187
,
R.270
,
E.273
19
PLIP interactions
:
19 interactions with chain B
Hydrogen bonds:
B:G.9
,
B:A.10
,
B:M.11
,
B:D.30
,
B:T.78
,
B:Q.82
,
B:N.105
,
B:N.105
,
B:A.131
,
B:A.131
,
B:R.270
,
B:E.273
Water bridges:
B:G.31
,
B:W.32
,
B:R.270
Salt bridges:
B:K.79
,
B:K.79
,
B:R.270
pi-Cation interactions:
B:R.270
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Miyanaga, A. et al., The crystal structure of D-mandelate dehydrogenase reveals its distinct substrate and coenzyme recognition mechanisms from those of 2-ketopantoate reductase. Biochem.Biophys.Res.Commun. (2013)
Release Date
2014-07-23
Peptides
2-dehydropantoate 2-reductase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
E
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2-dehydropantoate 2-reductase
Related Entries With Identical Sequence
3wfi.1
|
3wfj.2
|
3wfj.3
|
3wfj.4
|
5x20.1
|
5x20.2
|
5x20.3
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