- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- hetero-1-1-1-mer
- Ligands
- 2 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 1 x ALF: TETRAFLUOROALUMINATE ION(Non-covalent)
- 1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.4: 21 residues within 4Å:- Chain A: T.371, D.443, E.446, F.475, S.477, K.480, Y.481, Q.482, K.501, G.502, A.503, R.544, V.545, L.546, T.610, G.611, D.612, R.685, N.713
- Ligands: MG.1, ALF.2
15 PLIP interactions:15 interactions with chain A- Hydrogen bonds: A:T.371, A:E.446, A:E.446, A:Q.482, A:R.544, A:V.545, A:G.611, A:G.611, A:D.612, A:R.685, A:N.713
- Salt bridges: A:K.480, A:R.544
- pi-Stacking: A:F.475, A:F.475
- 4 x NA: SODIUM ION(Non-functional Binders)
NA.5: 7 residues within 4Å:- Chain A: V.322, A.323, N.324, V.325, E.327, D.804
- Ligands: NA.6
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:V.325, A:D.804
- Water bridges: A:N.776
NA.6: 8 residues within 4Å:- Chain A: A.323, T.772, S.775, N.776, E.779, D.804, D.808
- Ligands: NA.5
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.804, A:D.808
- Water bridges: A:N.776
NA.7: 6 residues within 4Å:- Chain A: Y.771, T.772, T.774, S.775, D.808, Q.923
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:T.774, A:T.774, A:S.775, A:Q.923
NA.8: 3 residues within 4Å:- Chain A: K.719, A.721, D.740
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.719, A:D.740
- 5 x PC1: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
PC1.9: 12 residues within 4Å:- Chain A: F.284, I.287, I.288, L.784, K.836, V.838, N.839, E.840, I.843, Y.847
- Ligands: PC1.12, CLR.14
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:I.288, A:L.784, A:L.784, A:V.838, A:Y.847
- Hydrogen bonds: A:E.840
- Salt bridges: A:E.840
PC1.10: 14 residues within 4Å:- Chain A: V.128, V.132, I.135, F.139, Y.142, Q.143, K.146, V.798, C.802, L.805, M.809, V.810, Y.817, F.949
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:V.128, A:V.132, A:I.135, A:F.139, A:F.139, A:V.810
- Hydrogen bonds: A:Q.143, A:Y.817
- Salt bridges: A:K.146
PC1.11: 11 residues within 4Å:- Chain A: D.823, N.935, S.936, F.938, Q.939, V.993, E.996, V.997, L.1000, R.1003
- Ligands: CLR.15
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:F.938, A:V.993, A:E.996, A:V.997, A:L.1000
- Salt bridges: A:D.823, A:R.1003, A:R.1003
PC1.12: 6 residues within 4Å:- Chain A: H.283, F.294, F.299, E.840
- Chain B: W.12
- Ligands: PC1.9
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:F.294, A:F.299
- Hydrogen bonds: A:E.840
PC1.16: 6 residues within 4Å:- Chain A: K.977, P.978, T.979
- Chain B: Y.68
- Chain C: Y.21
- Ligands: CLR.18
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain A- Hydrogen bonds: C:Y.21, A:T.979
- 1 x EFO: Oligomycin A(Non-covalent)
- 3 x CLR: CHOLESTEROL(Non-covalent)
CLR.14: 12 residues within 4Å:- Chain A: T.781, L.784, E.840, I.843, Y.847, G.848, M.852
- Chain B: R.27, I.35, Y.39, Y.43
- Ligands: PC1.9
9 PLIP interactions:4 interactions with chain A, 5 interactions with chain B- Hydrophobic interactions: A:T.781, A:L.784, A:I.843, A:Y.847, B:I.35, B:Y.39, B:Y.39
- Hydrogen bonds: B:R.27, B:R.27
CLR.15: 9 residues within 4Å:- Chain A: F.860, E.868, T.979, C.983, P.986
- Chain B: T.53, V.56, M.57
- Ligands: PC1.11
6 PLIP interactions:4 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:V.56, B:V.56, B:V.56, B:M.57, A:F.860, A:P.986
CLR.18: 11 residues within 4Å:- Chain A: W.924, Y.963, P.978, W.981, F.982, F.985
- Chain C: V.26, G.29, G.30, F.33
- Ligands: PC1.16
13 PLIP interactions:5 interactions with chain C, 8 interactions with chain A- Hydrophobic interactions: C:F.33, C:F.33, C:F.33, C:F.33, C:F.33, A:W.924, A:W.924, A:Y.963, A:W.981, A:W.981, A:F.982, A:F.985, A:F.985
- 1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kanai, R. et al., Crystal structure of a Na1-bound Na1,K1-ATPase preceding the E1P state. Nature (2013)
- Release Date
- 2013-10-09
- Peptides
- Sodium/potassium-transporting ATPase subunit alpha-1: A
Sodium/potassium-transporting ATPase subunit beta-1: B
Na+/K+ ATPase gamma subunit transcript variant a: C - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
DC
E - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- hetero-1-1-1-mer
- Ligands
- 2 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 1 x ALF: TETRAFLUOROALUMINATE ION(Non-covalent)
- 1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 4 x NA: SODIUM ION(Non-functional Binders)
- 5 x PC1: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
- 1 x EFO: Oligomycin A(Non-covalent)
- 3 x CLR: CHOLESTEROL(Non-covalent)
- 1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kanai, R. et al., Crystal structure of a Na1-bound Na1,K1-ATPase preceding the E1P state. Nature (2013)
- Release Date
- 2013-10-09
- Peptides
- Sodium/potassium-transporting ATPase subunit alpha-1: A
Sodium/potassium-transporting ATPase subunit beta-1: B
Na+/K+ ATPase gamma subunit transcript variant a: C - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
DC
E - Membrane
-
We predict this structure to be a membrane protein.