SMTL ID : 3wkn.3 (3 other biounits)

Crystal structure of the artificial protein AFFinger p17 (AF.p17) complexed with Fc fragment of human IgG

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-2-2-mer

Ligands

2 x NAG- NAG- BMA- MAN- NAG- GAL- MAN- NAG- FUC: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-GAL-MAN-NAG-FUC.1: 14 residues within 4Å: Chain A: F.6, F.8, P.9, P.10, K.11, D.14, E.23, T.25, V.29, D.30, Q.60, N.62, T.64, R.66 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:F.8, A:K.11, A:D.14, A:D.14, A:E.23, A:E.23 NAG-NAG-BMA-MAN-NAG-GAL-MAN-NAG-FUC.2: 14 residues within 4Å: Chain B: F.6, F.8, P.9, P.10, K.11, E.23, T.25, V.29, D.30, Q.60, N.62, T.64, R.66, K.99 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:K.11, B:D.14, B:E.23, B:E.23, B:T.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Watanabe, H. et al., Adaptive Assembly: Maximizing the Potential of a Given Functional Peptide with a Tailor-Made Protein Scaffold. Chem.Biol. (2015)

Release Date

2014-10-29

Peptides

Ig gamma-1 chain C region: AB
AFFinger p17: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

B
J

C
K

D
L

Ig gamma-1 chain C region

AFFinger p17

Related Entries With Identical Sequence