SMTL ID : 3wl4.1

N,N'-diacetylchitobiose deacetylase (Se-derivative) from Pyrococcus furiosus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

homo-hexamer

Ligands

12 x CD: CADMIUM ION(Non-covalent)

CD.1: 4 residues within 4Å: Chain A: H.40, D.43, H.151 Ligands: TAM.9 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.40, A:D.43, A:D.43, A:H.151 CD.2: 5 residues within 4Å: Chain A: E.225 Chain E: M.1 Ligands: CL.5, CL.6, CL.7 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.225, A:E.225 CD.20: 4 residues within 4Å: Chain B: H.40, D.43, H.151 Ligands: TAM.28 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.40, B:D.43, B:D.43, B:H.151 CD.21: 5 residues within 4Å: Chain B: E.225 Chain D: M.1 Ligands: CL.24, CL.25, CL.26 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.225, B:E.225 CD.42: 4 residues within 4Å: Chain C: H.40, D.43, H.151 Ligands: TAM.50 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.40, C:D.43, C:D.43, C:H.151 CD.43: 5 residues within 4Å: Chain A: M.1 Chain C: E.225 Ligands: CL.46, CL.47, CL.48 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:E.225, C:E.225 CD.61: 4 residues within 4Å: Chain D: H.40, D.43, H.151 Ligands: TAM.69 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:H.40, D:D.43, D:D.43, D:H.151 CD.62: 5 residues within 4Å: Chain D: E.225 Chain F: M.1 Ligands: CL.65, CL.66, CL.67 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:E.225, D:E.225 CD.83: 4 residues within 4Å: Chain E: H.40, D.43, H.151 Ligands: TAM.91 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:H.40, E:D.43, E:D.43, E:H.151 CD.84: 5 residues within 4Å: Chain C: M.1 Chain E: E.225 Ligands: CL.87, CL.88, CL.89 2 PLIP interactions: 2 interactions with chain E Metal complexes: E:E.225, E:E.225 CD.102: 4 residues within 4Å: Chain F: H.40, D.43, H.151 Ligands: TAM.110 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:H.40, F:D.43, F:D.43, F:H.151 CD.103: 5 residues within 4Å: Chain B: M.1 Chain F: E.225 Ligands: CL.106, CL.107, CL.108 2 PLIP interactions: 2 interactions with chain F Metal complexes: F:E.225, F:E.225

6 x CA: CALCIUM ION(Non-covalent)

CA.3: 3 residues within 4Å: Chain A: D.265, L.266 Chain C: H.193 5 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: C:H.193, A:D.265, H2O.7, H2O.7, H2O.7 CA.22: 3 residues within 4Å: Chain B: D.265, L.266 Chain F: H.193 5 PLIP interactions: 1 interactions with chain B, 1 interactions with chain F, 3 Ligand-Water interactions Metal complexes: B:D.265, F:H.193, H2O.13, H2O.13, H2O.13 CA.44: 3 residues within 4Å: Chain C: D.265, L.266 Chain E: H.193 5 PLIP interactions: 1 interactions with chain E, 1 interactions with chain C, 3 Ligand-Water interactions Metal complexes: E:H.193, C:D.265, H2O.19, H2O.19, H2O.19 CA.63: 3 residues within 4Å: Chain B: H.193 Chain D: D.265, L.266 5 PLIP interactions: 1 interactions with chain B, 1 interactions with chain D, 3 Ligand-Water interactions Metal complexes: B:H.193, D:D.265, H2O.25, H2O.25, H2O.25 CA.85: 3 residues within 4Å: Chain A: H.193 Chain E: D.265, L.266 5 PLIP interactions: 1 interactions with chain A, 1 interactions with chain E, 3 Ligand-Water interactions Metal complexes: A:H.193, E:D.265, H2O.31, H2O.31, H2O.32 CA.104: 3 residues within 4Å: Chain D: H.193 Chain F: D.265, L.266 5 PLIP interactions: 1 interactions with chain F, 1 interactions with chain D, 3 Ligand-Water interactions Metal complexes: F:D.265, D:H.193, H2O.37, H2O.37, H2O.38

24 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 8 residues within 4Å: Chain A: P.149, R.152, R.153 Chain E: Y.116 Ligands: TAM.8, HEZ.10, TAM.49, TAM.90 Ligand excluded by PLIP CL.5: 5 residues within 4Å: Chain A: E.225 Chain E: M.1 Ligands: CD.2, CL.6, CL.7 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain A: E.225 Ligands: CD.2, CL.5, CL.7 Ligand excluded by PLIP CL.7: 5 residues within 4Å: Chain A: E.225 Chain E: M.1 Ligands: CD.2, CL.5, CL.6 Ligand excluded by PLIP CL.23: 8 residues within 4Å: Chain B: P.149, R.152, R.153 Chain D: Y.116 Ligands: TAM.27, HEZ.31, TAM.68, TAM.109 Ligand excluded by PLIP CL.24: 4 residues within 4Å: Chain B: E.225 Ligands: CD.21, CL.25, CL.26 Ligand excluded by PLIP CL.25: 5 residues within 4Å: Chain B: E.225 Chain D: M.1 Ligands: CD.21, CL.24, CL.26 Ligand excluded by PLIP CL.26: 5 residues within 4Å: Chain B: E.225 Chain D: M.1 Ligands: CD.21, CL.24, CL.25 Ligand excluded by PLIP CL.45: 8 residues within 4Å: Chain A: Y.116 Chain C: P.149, R.152, R.153 Ligands: TAM.8, TAM.49, HEZ.51, TAM.90 Ligand excluded by PLIP CL.46: 5 residues within 4Å: Chain A: M.1 Chain C: E.225 Ligands: CD.43, CL.47, CL.48 Ligand excluded by PLIP CL.47: 4 residues within 4Å: Chain C: E.225 Ligands: CD.43, CL.46, CL.48 Ligand excluded by PLIP CL.48: 5 residues within 4Å: Chain A: M.1 Chain C: E.225 Ligands: CD.43, CL.46, CL.47 Ligand excluded by PLIP CL.64: 8 residues within 4Å: Chain D: P.149, R.152, R.153 Chain F: Y.116 Ligands: TAM.27, TAM.68, HEZ.72, TAM.109 Ligand excluded by PLIP CL.65: 4 residues within 4Å: Chain D: E.225 Ligands: CD.62, CL.66, CL.67 Ligand excluded by PLIP CL.66: 5 residues within 4Å: Chain D: E.225 Chain F: M.1 Ligands: CD.62, CL.65, CL.67 Ligand excluded by PLIP CL.67: 5 residues within 4Å: Chain D: E.225 Chain F: M.1 Ligands: CD.62, CL.65, CL.66 Ligand excluded by PLIP CL.86: 8 residues within 4Å: Chain C: Y.116 Chain E: P.149, R.152, R.153 Ligands: TAM.8, TAM.49, TAM.90, HEZ.92 Ligand excluded by PLIP CL.87: 5 residues within 4Å: Chain C: M.1 Chain E: E.225 Ligands: CD.84, CL.88, CL.89 Ligand excluded by PLIP CL.88: 4 residues within 4Å: Chain E: E.225 Ligands: CD.84, CL.87, CL.89 Ligand excluded by PLIP CL.89: 5 residues within 4Å: Chain C: M.1 Chain E: E.225 Ligands: CD.84, CL.87, CL.88 Ligand excluded by PLIP CL.105: 8 residues within 4Å: Chain B: Y.116 Chain F: P.149, R.152, R.153 Ligands: TAM.27, TAM.68, TAM.109, HEZ.113 Ligand excluded by PLIP CL.106: 4 residues within 4Å: Chain F: E.225 Ligands: CD.103, CL.107, CL.108 Ligand excluded by PLIP CL.107: 5 residues within 4Å: Chain B: M.1 Chain F: E.225 Ligands: CD.103, CL.106, CL.108 Ligand excluded by PLIP CL.108: 5 residues within 4Å: Chain B: M.1 Chain F: E.225 Ligands: CD.103, CL.106, CL.107 Ligand excluded by PLIP

12 x TAM: TRIS(HYDROXYETHYL)AMINOMETHANE(Non-covalent)

TAM.8: 14 residues within 4Å: Chain A: Y.116, R.153 Chain C: Y.116, R.153 Chain E: Y.116, R.153 Ligands: CL.4, HEZ.10, CL.45, TAM.49, HEZ.51, CL.86, TAM.90, HEZ.92 7 PLIP interactions: 3 interactions with chain E, 3 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: E:Y.116, A:Y.116 Hydrogen bonds: E:R.153, E:R.153, A:R.153, A:R.153, C:R.153 TAM.9: 11 residues within 4Å: Chain A: H.40, D.42, D.43, I.46, H.151, Y.191, Q.218 Chain E: H.259, I.260 Ligands: CD.1, HEZ.15 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain E Hydrophobic interactions: A:I.46, E:I.260 Hydrogen bonds: A:D.42, A:R.88, A:Q.218 Water bridges: A:R.88 TAM.27: 17 residues within 4Å: Chain B: Y.116, R.153 Chain D: Y.116, R.153 Chain F: Y.116, R.153 Ligands: CL.23, HEZ.31, HEZ.32, CL.64, TAM.68, HEZ.72, HEZ.73, CL.105, TAM.109, HEZ.113, HEZ.114 6 PLIP interactions: 2 interactions with chain B, 1 interactions with chain D, 3 interactions with chain F Hydrogen bonds: B:R.153, B:R.153, D:R.153, F:R.153, F:R.153 Hydrophobic interactions: F:Y.116 TAM.28: 12 residues within 4Å: Chain B: H.40, D.42, D.43, I.46, R.88, H.151, Y.191, Q.218, F.219 Chain D: H.259, I.260 Ligands: CD.20 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain D Hydrogen bonds: B:D.42, B:R.88, B:H.148, B:Q.218 Hydrophobic interactions: D:I.260 TAM.49: 14 residues within 4Å: Chain A: Y.116, R.153 Chain C: Y.116, R.153 Chain E: Y.116, R.153 Ligands: CL.4, TAM.8, HEZ.10, CL.45, HEZ.51, CL.86, TAM.90, HEZ.92 6 PLIP interactions: 2 interactions with chain A, 1 interactions with chain E, 3 interactions with chain C Hydrophobic interactions: A:Y.116, C:Y.116 Hydrogen bonds: A:R.153, E:R.153, C:R.153, C:R.153 TAM.50: 11 residues within 4Å: Chain A: H.259, I.260 Chain C: H.40, D.42, D.43, I.46, H.151, Y.191, Q.218 Ligands: CD.42, HEZ.56 8 PLIP interactions: 7 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: C:I.46, A:I.260 Hydrogen bonds: C:H.40, C:R.88, C:H.148, C:H.151, C:Q.218 Water bridges: C:R.88 TAM.68: 17 residues within 4Å: Chain B: Y.116, R.153 Chain D: Y.116, R.153 Chain F: Y.116, R.153 Ligands: CL.23, TAM.27, HEZ.31, HEZ.32, CL.64, HEZ.72, HEZ.73, CL.105, TAM.109, HEZ.113, HEZ.114 6 PLIP interactions: 2 interactions with chain D, 1 interactions with chain F, 3 interactions with chain B Hydrogen bonds: D:R.153, D:R.153, F:R.153, B:R.153, B:R.153 Hydrophobic interactions: B:Y.116 TAM.69: 12 residues within 4Å: Chain D: H.40, D.42, D.43, I.46, R.88, H.151, Y.191, Q.218, F.219 Chain F: H.259, I.260 Ligands: CD.61 5 PLIP interactions: 1 interactions with chain F, 4 interactions with chain D Hydrophobic interactions: F:I.260 Hydrogen bonds: D:D.42, D:R.88, D:H.148, D:Q.218 TAM.90: 14 residues within 4Å: Chain A: Y.116, R.153 Chain C: Y.116, R.153 Chain E: Y.116, R.153 Ligands: CL.4, TAM.8, HEZ.10, CL.45, TAM.49, HEZ.51, CL.86, HEZ.92 6 PLIP interactions: 2 interactions with chain E, 2 interactions with chain A, 2 interactions with chain C Hydrophobic interactions: E:Y.116, C:Y.116 Hydrogen bonds: E:R.153, A:R.153, A:R.153, C:R.153 TAM.91: 11 residues within 4Å: Chain C: H.259, I.260 Chain E: H.40, D.42, D.43, I.46, H.151, Y.191, Q.218 Ligands: CD.83, HEZ.97 6 PLIP interactions: 1 interactions with chain C, 5 interactions with chain E Hydrophobic interactions: C:I.260, E:I.46 Hydrogen bonds: E:D.42, E:R.88, E:Q.218 Water bridges: E:R.88 TAM.109: 17 residues within 4Å: Chain B: Y.116, R.153 Chain D: Y.116, R.153 Chain F: Y.116, R.153 Ligands: CL.23, TAM.27, HEZ.31, HEZ.32, CL.64, TAM.68, HEZ.72, HEZ.73, CL.105, HEZ.113, HEZ.114 6 PLIP interactions: 2 interactions with chain F, 3 interactions with chain D, 1 interactions with chain B Hydrogen bonds: F:R.153, F:R.153, D:R.153, D:R.153, B:R.153 Hydrophobic interactions: D:Y.116 TAM.110: 12 residues within 4Å: Chain B: H.259, I.260 Chain F: H.40, D.42, D.43, I.46, R.88, H.151, Y.191, Q.218, F.219 Ligands: CD.102 5 PLIP interactions: 4 interactions with chain F, 1 interactions with chain B Hydrogen bonds: F:D.42, F:R.88, F:H.148, F:Q.218 Hydrophobic interactions: B:I.260

63 x HEZ: HEXANE-1,6-DIOL(Non-covalent)

HEZ.10: 10 residues within 4Å: Chain A: P.141, W.142, R.152 Chain E: F.156 Ligands: CL.4, TAM.8, TAM.49, HEZ.51, TAM.90, HEZ.92 Ligand excluded by PLIP HEZ.11: 6 residues within 4Å: Chain A: P.195, N.196, Y.197, I.198, K.241, I.242 Ligand excluded by PLIP HEZ.12: 4 residues within 4Å: Chain A: F.237, E.240, K.241 Chain E: F.8 Ligand excluded by PLIP HEZ.14: 5 residues within 4Å: Chain A: E.113, L.114, P.115, Y.116, R.153 Ligand excluded by PLIP HEZ.15: 4 residues within 4Å: Chain A: Q.218, I.223, W.227 Ligands: TAM.9 Ligand excluded by PLIP HEZ.16: 5 residues within 4Å: Chain A: L.20, E.21, F.22, N.23, P.254 Ligand excluded by PLIP HEZ.17: 9 residues within 4Å: Chain A: Q.166, S.183, V.184, S.185, F.186, I.187, M.253, G.255 Ligands: HEZ.19 Ligand excluded by PLIP HEZ.18: 7 residues within 4Å: Chain A: M.236, E.240, G.243, V.244, R.245 Chain E: S.6, T.7 Ligand excluded by PLIP HEZ.19: 8 residues within 4Å: Chain A: I.159, A.163, I.187, G.255, Y.258 Chain C: S.147, H.148 Ligands: HEZ.17 Ligand excluded by PLIP HEZ.29: 10 residues within 4Å: Chain B: V.162, Q.166, S.183, V.184, S.185, F.186, I.187, M.253, G.255 Ligands: HEZ.115 Ligand excluded by PLIP HEZ.30: 6 residues within 4Å: Chain B: P.195, N.196, Y.197, I.198, K.241, I.242 Ligand excluded by PLIP HEZ.31: 10 residues within 4Å: Chain B: P.141, W.142, R.152 Chain D: F.156 Ligands: CL.23, TAM.27, TAM.68, HEZ.72, TAM.109, HEZ.113 Ligand excluded by PLIP HEZ.32: 10 residues within 4Å: Chain B: E.113, P.115, Y.116, R.153 Ligands: TAM.27, HEZ.39, TAM.68, HEZ.73, TAM.109, HEZ.114 Ligand excluded by PLIP HEZ.33: 8 residues within 4Å: Chain B: S.147 Chain D: I.159, A.163, Q.166, G.255, Y.258 Ligands: HEZ.37, HEZ.70 Ligand excluded by PLIP HEZ.34: 7 residues within 4Å: Chain B: E.93, A.96, K.97, V.101, R.102, K.103, I.104 Ligand excluded by PLIP HEZ.36: 8 residues within 4Å: Chain B: D.76, E.77, K.78, L.79, S.80 Chain C: R.89 Chain D: P.168, N.169 Ligand excluded by PLIP HEZ.37: 10 residues within 4Å: Chain B: H.40, M.72, G.73, D.111, T.112, H.148 Chain D: A.163, Q.166, L.167 Ligands: HEZ.33 Ligand excluded by PLIP HEZ.38: 5 residues within 4Å: Chain B: L.20, E.21, F.22, P.254, G.255 Ligand excluded by PLIP HEZ.39: 7 residues within 4Å: Chain B: Y.109, R.110, E.113, P.115 Chain C: E.113 Chain D: R.118 Ligands: HEZ.32 Ligand excluded by PLIP HEZ.40: 3 residues within 4Å: Chain B: Y.145 Chain D: K.194, D.265 Ligand excluded by PLIP HEZ.41: 5 residues within 4Å: Chain B: F.237, E.240, K.241 Chain D: F.8, L.266 Ligand excluded by PLIP HEZ.51: 10 residues within 4Å: Chain A: F.156 Chain C: P.141, W.142, R.152 Ligands: TAM.8, HEZ.10, CL.45, TAM.49, TAM.90, HEZ.92 Ligand excluded by PLIP HEZ.52: 6 residues within 4Å: Chain C: P.195, N.196, Y.197, I.198, K.241, I.242 Ligand excluded by PLIP HEZ.53: 4 residues within 4Å: Chain A: F.8 Chain C: F.237, E.240, K.241 Ligand excluded by PLIP HEZ.55: 5 residues within 4Å: Chain C: E.113, L.114, P.115, Y.116, R.153 Ligand excluded by PLIP HEZ.56: 4 residues within 4Å: Chain C: Q.218, I.223, W.227 Ligands: TAM.50 Ligand excluded by PLIP HEZ.57: 5 residues within 4Å: Chain C: L.20, E.21, F.22, N.23, P.254 Ligand excluded by PLIP HEZ.58: 9 residues within 4Å: Chain C: Q.166, S.183, V.184, S.185, F.186, I.187, M.253, G.255 Ligands: HEZ.60 Ligand excluded by PLIP HEZ.59: 7 residues within 4Å: Chain A: S.6, T.7 Chain C: M.236, E.240, G.243, V.244, R.245 Ligand excluded by PLIP HEZ.60: 8 residues within 4Å: Chain C: I.159, A.163, I.187, G.255, Y.258 Chain E: S.147, H.148 Ligands: HEZ.58 Ligand excluded by PLIP HEZ.70: 10 residues within 4Å: Chain D: V.162, Q.166, S.183, V.184, S.185, F.186, I.187, M.253, G.255 Ligands: HEZ.33 Ligand excluded by PLIP HEZ.71: 6 residues within 4Å: Chain D: P.195, N.196, Y.197, I.198, K.241, I.242 Ligand excluded by PLIP HEZ.72: 10 residues within 4Å: Chain D: P.141, W.142, R.152 Chain F: F.156 Ligands: TAM.27, HEZ.31, CL.64, TAM.68, TAM.109, HEZ.113 Ligand excluded by PLIP HEZ.73: 10 residues within 4Å: Chain D: E.113, P.115, Y.116, R.153 Ligands: TAM.27, HEZ.32, TAM.68, HEZ.80, TAM.109, HEZ.114 Ligand excluded by PLIP HEZ.74: 8 residues within 4Å: Chain D: S.147 Chain F: I.159, A.163, Q.166, G.255, Y.258 Ligands: HEZ.78, HEZ.111 Ligand excluded by PLIP HEZ.75: 7 residues within 4Å: Chain D: E.93, A.96, K.97, V.101, R.102, K.103, I.104 Ligand excluded by PLIP HEZ.77: 8 residues within 4Å: Chain D: D.76, E.77, K.78, L.79, S.80 Chain E: R.89 Chain F: P.168, N.169 Ligand excluded by PLIP HEZ.78: 10 residues within 4Å: Chain D: H.40, M.72, G.73, D.111, T.112, H.148 Chain F: A.163, Q.166, L.167 Ligands: HEZ.74 Ligand excluded by PLIP HEZ.79: 5 residues within 4Å: Chain D: L.20, E.21, F.22, P.254, G.255 Ligand excluded by PLIP HEZ.80: 7 residues within 4Å: Chain D: Y.109, R.110, E.113, P.115 Chain E: E.113 Chain F: R.118 Ligands: HEZ.73 Ligand excluded by PLIP HEZ.81: 3 residues within 4Å: Chain D: Y.145 Chain F: K.194, D.265 Ligand excluded by PLIP HEZ.82: 5 residues within 4Å: Chain D: F.237, E.240, K.241 Chain F: F.8, L.266 Ligand excluded by PLIP HEZ.92: 10 residues within 4Å: Chain C: F.156 Chain E: P.141, W.142, R.152 Ligands: TAM.8, HEZ.10, TAM.49, HEZ.51, CL.86, TAM.90 Ligand excluded by PLIP HEZ.93: 6 residues within 4Å: Chain E: P.195, N.196, Y.197, I.198, K.241, I.242 Ligand excluded by PLIP HEZ.94: 4 residues within 4Å: Chain C: F.8 Chain E: F.237, E.240, K.241 Ligand excluded by PLIP HEZ.96: 5 residues within 4Å: Chain E: E.113, L.114, P.115, Y.116, R.153 Ligand excluded by PLIP HEZ.97: 4 residues within 4Å: Chain E: Q.218, I.223, W.227 Ligands: TAM.91 Ligand excluded by PLIP HEZ.98: 5 residues within 4Å: Chain E: L.20, E.21, F.22, N.23, P.254 Ligand excluded by PLIP HEZ.99: 9 residues within 4Å: Chain E: Q.166, S.183, V.184, S.185, F.186, I.187, M.253, G.255 Ligands: HEZ.101 Ligand excluded by PLIP HEZ.100: 7 residues within 4Å: Chain C: S.6, T.7 Chain E: M.236, E.240, G.243, V.244, R.245 Ligand excluded by PLIP HEZ.101: 8 residues within 4Å: Chain A: S.147, H.148 Chain E: I.159, A.163, I.187, G.255, Y.258 Ligands: HEZ.99 Ligand excluded by PLIP HEZ.111: 10 residues within 4Å: Chain F: V.162, Q.166, S.183, V.184, S.185, F.186, I.187, M.253, G.255 Ligands: HEZ.74 Ligand excluded by PLIP HEZ.112: 6 residues within 4Å: Chain F: P.195, N.196, Y.197, I.198, K.241, I.242 Ligand excluded by PLIP HEZ.113: 10 residues within 4Å: Chain B: F.156 Chain F: P.141, W.142, R.152 Ligands: TAM.27, HEZ.31, TAM.68, HEZ.72, CL.105, TAM.109 Ligand excluded by PLIP HEZ.114: 10 residues within 4Å: Chain F: E.113, P.115, Y.116, R.153 Ligands: TAM.27, HEZ.32, TAM.68, HEZ.73, TAM.109, HEZ.121 Ligand excluded by PLIP HEZ.115: 8 residues within 4Å: Chain B: I.159, A.163, Q.166, G.255, Y.258 Chain F: S.147 Ligands: HEZ.29, HEZ.119 Ligand excluded by PLIP HEZ.116: 7 residues within 4Å: Chain F: E.93, A.96, K.97, V.101, R.102, K.103, I.104 Ligand excluded by PLIP HEZ.118: 8 residues within 4Å: Chain A: R.89 Chain B: P.168, N.169 Chain F: D.76, E.77, K.78, L.79, S.80 Ligand excluded by PLIP HEZ.119: 10 residues within 4Å: Chain B: A.163, Q.166, L.167 Chain F: H.40, M.72, G.73, D.111, T.112, H.148 Ligands: HEZ.115 Ligand excluded by PLIP HEZ.120: 5 residues within 4Å: Chain F: L.20, E.21, F.22, P.254, G.255 Ligand excluded by PLIP HEZ.121: 7 residues within 4Å: Chain A: E.113 Chain B: R.118 Chain F: Y.109, R.110, E.113, P.115 Ligands: HEZ.114 Ligand excluded by PLIP HEZ.122: 3 residues within 4Å: Chain B: K.194, D.265 Chain F: Y.145 Ligand excluded by PLIP HEZ.123: 5 residues within 4Å: Chain B: F.8, L.266 Chain F: F.237, E.240, K.241 Ligand excluded by PLIP

6 x HE2: HEXAN-1-OL(Non-covalent)

HE2.13: 5 residues within 4Å: Chain A: E.93, A.96, V.101, K.103, I.104 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:E.93, A:A.96, A:I.104 Hydrogen bonds: A:I.104, A:I.104 HE2.35: 13 residues within 4Å: Chain B: I.46, G.47, Y.191, K.208, F.230, L.231, V.234, T.235, Y.238, G.247, E.248 Chain D: I.260, P.262 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain D Hydrophobic interactions: B:I.46, B:L.231, B:V.234, B:T.235, B:Y.238, B:E.248 Hydrogen bonds: D:I.260 HE2.54: 5 residues within 4Å: Chain C: E.93, A.96, V.101, K.103, I.104 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:E.93, C:A.96, C:I.104 Hydrogen bonds: C:I.104, C:I.104 HE2.76: 13 residues within 4Å: Chain D: I.46, G.47, Y.191, K.208, F.230, L.231, V.234, T.235, Y.238, G.247, E.248 Chain F: I.260, P.262 7 PLIP interactions: 6 interactions with chain D, 1 interactions with chain F Hydrophobic interactions: D:I.46, D:L.231, D:V.234, D:T.235, D:Y.238, D:E.248 Hydrogen bonds: F:I.260 HE2.95: 5 residues within 4Å: Chain E: E.93, A.96, V.101, K.103, I.104 5 PLIP interactions: 5 interactions with chain E Hydrophobic interactions: E:E.93, E:A.96, E:I.104 Hydrogen bonds: E:I.104, E:I.104 HE2.117: 13 residues within 4Å: Chain B: I.260, P.262 Chain F: I.46, G.47, Y.191, K.208, F.230, L.231, V.234, T.235, Y.238, G.247, E.248 7 PLIP interactions: 6 interactions with chain F, 1 interactions with chain B Hydrophobic interactions: F:I.46, F:L.231, F:V.234, F:T.235, F:Y.238, F:E.248 Hydrogen bonds: B:I.260

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mine, S. et al., Expression from engineered Escherichia coli chromosome and crystallographic study of archaeal N,N'-diacetylchitobiose deacetylase. Febs J. (2014)

Release Date

2014-05-07

Peptides

Uncharacterized protein: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Uncharacterized protein

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