- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-trimer
- Ligands
- 9 x CU: COPPER (II) ION(Non-covalent)
- 3 x OXY: OXYGEN MOLECULE(Non-covalent)
OXY.4: 8 residues within 4Å:- Chain A: D.98, H.100, H.134
- Chain B: H.244, V.246, H.294, F.296
- Ligands: CU.2
No protein-ligand interaction detected (PLIP)OXY.11: 8 residues within 4Å:- Chain B: D.98, H.100, H.134
- Chain C: H.244, V.246, H.294, F.296
- Ligands: CU.9
No protein-ligand interaction detected (PLIP)OXY.18: 8 residues within 4Å:- Chain A: H.244, V.246, H.294, F.296
- Chain C: D.98, H.100, H.134
- Ligands: CU.16
No protein-ligand interaction detected (PLIP)- 3 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.5: 6 residues within 4Å:- Chain A: D.163, V.166, D.167, R.168, E.169, R.229
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:V.166
- Hydrogen bonds: A:E.169
MPD.12: 6 residues within 4Å:- Chain B: D.163, V.166, D.167, R.168, E.169, R.229
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:V.166
MPD.19: 6 residues within 4Å:- Chain C: D.163, V.166, D.167, R.168, E.169, R.229
1 PLIP interactions:1 interactions with chain C- Hydrophobic interactions: C:V.166
- 3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.6: 3 residues within 4Å:- Chain A: M.33, E.34, E.44
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.34, A:E.44
- Water bridges: A:M.33
PEG.13: 3 residues within 4Å:- Chain B: M.33, E.34, E.44
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:E.34, B:E.44
- Water bridges: B:M.33
PEG.20: 3 residues within 4Å:- Chain C: M.33, E.34, E.44
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:E.34, C:E.44
- Water bridges: C:M.33
- 3 x ACY: ACETIC ACID(Non-functional Binders)
ACY.7: 3 residues within 4Å:- Chain A: Y.180, N.181, D.182
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:D.182
- Water bridges: A:N.181
ACY.14: 3 residues within 4Å:- Chain B: Y.180, N.181, D.182
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:D.182
- Water bridges: B:N.181
ACY.21: 3 residues within 4Å:- Chain C: Y.180, N.181, D.182
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:D.182
- Water bridges: C:N.181
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fukuda, Y. et al., Crystallographic evidence for side-on dioxygen trapped on type 2 copper in copper-containing nitrite reductase. To be Published
- Release Date
- 2014-12-10
- Peptides
- Nitrite reductase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-trimer
- Ligands
- 9 x CU: COPPER (II) ION(Non-covalent)
- 3 x OXY: OXYGEN MOLECULE(Non-covalent)
- 3 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 3 x ACY: ACETIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fukuda, Y. et al., Crystallographic evidence for side-on dioxygen trapped on type 2 copper in copper-containing nitrite reductase. To be Published
- Release Date
- 2014-12-10
- Peptides
- Nitrite reductase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A