- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-12-mer
- Ligands
- 12 x SPD: SPERMIDINE(Non-covalent)
- 12 x COA: COENZYME A(Non-covalent)
COA.2: 18 residues within 4Å:- Chain A: Y.28, W.29, Q.83, I.84, I.85, I.86, Y.90, Q.91, G.92, K.93, G.94, L.95, A.96, I.119, N.124, E.125, K.126, Y.131
11 PLIP interactions:11 interactions with chain A- Hydrophobic interactions: A:Y.28, A:A.96, A:K.126
- Hydrogen bonds: A:I.86, A:G.92, A:G.94, A:L.95, A:A.96, A:Y.131
- Salt bridges: A:K.126, A:K.126
COA.4: 22 residues within 4Å:- Chain B: Y.28, W.29, Q.83, I.84, I.85, I.86, Q.91, G.92, K.93, G.94, L.95, A.96, T.97, I.119, V.120, N.124, E.125, K.126, H.129, I.130, Y.131, K.133
16 PLIP interactions:16 interactions with chain B- Hydrophobic interactions: B:Q.91
- Hydrogen bonds: B:I.84, B:I.84, B:I.84, B:I.86, B:I.86, B:G.92, B:G.92, B:G.94, B:L.95, B:A.96, B:T.97
- Salt bridges: B:K.126, B:K.126, B:H.129, B:K.133
COA.6: 21 residues within 4Å:- Chain C: Y.28, W.29, Q.83, I.84, I.85, I.86, Q.91, G.92, K.93, G.94, L.95, A.96, T.97, I.119, V.120, N.124, E.125, K.126, H.129, Y.131, K.133
16 PLIP interactions:16 interactions with chain C- Hydrophobic interactions: C:Y.28, C:A.96, C:K.126
- Hydrogen bonds: C:Y.28, C:I.86, C:G.92, C:G.94, C:L.95, C:A.96, C:T.97, C:E.125, C:E.125, C:K.126, C:K.126
- Salt bridges: C:K.126, C:K.133
COA.8: 19 residues within 4Å:- Chain D: Y.28, I.84, I.85, I.86, Q.91, G.92, K.93, G.94, L.95, A.96, T.97, V.120, N.124, K.126, A.127, H.129, I.130, Y.131, K.133
16 PLIP interactions:16 interactions with chain D- Hydrophobic interactions: D:Y.28, D:A.96
- Hydrogen bonds: D:I.86, D:G.92, D:K.93, D:G.94, D:L.95, D:A.96, D:T.97, D:T.97, D:N.124, D:K.126, D:K.126
- Salt bridges: D:K.126, D:H.129, D:K.133
COA.10: 18 residues within 4Å:- Chain E: Y.28, W.29, Q.83, I.84, I.85, I.86, Y.90, Q.91, G.92, K.93, G.94, L.95, A.96, I.119, N.124, E.125, K.126, Y.131
10 PLIP interactions:10 interactions with chain E- Hydrophobic interactions: E:Y.28, E:A.96, E:K.126
- Hydrogen bonds: E:I.86, E:G.92, E:G.94, E:L.95, E:A.96
- Salt bridges: E:K.126, E:K.126
COA.12: 22 residues within 4Å:- Chain F: Y.28, W.29, Q.83, I.84, I.85, I.86, Q.91, G.92, K.93, G.94, L.95, A.96, T.97, I.119, V.120, N.124, E.125, K.126, H.129, I.130, Y.131, K.133
17 PLIP interactions:17 interactions with chain F- Hydrophobic interactions: F:Q.91
- Hydrogen bonds: F:I.84, F:I.84, F:I.84, F:I.86, F:I.86, F:G.92, F:G.92, F:G.94, F:L.95, F:A.96, F:T.97, F:Y.131
- Salt bridges: F:K.126, F:K.126, F:H.129, F:K.133
COA.14: 21 residues within 4Å:- Chain G: Y.28, W.29, Q.83, I.84, I.85, I.86, Q.91, G.92, K.93, G.94, L.95, A.96, T.97, I.119, V.120, N.124, E.125, K.126, H.129, Y.131, K.133
17 PLIP interactions:17 interactions with chain G- Hydrophobic interactions: G:Y.28, G:A.96, G:K.126
- Hydrogen bonds: G:Y.28, G:I.86, G:G.92, G:G.94, G:L.95, G:A.96, G:T.97, G:T.97, G:E.125, G:E.125, G:K.126, G:K.126
- Salt bridges: G:K.126, G:K.133
COA.16: 19 residues within 4Å:- Chain H: Y.28, I.84, I.85, I.86, Q.91, G.92, K.93, G.94, L.95, A.96, T.97, V.120, N.124, K.126, A.127, H.129, I.130, Y.131, K.133
15 PLIP interactions:15 interactions with chain H- Hydrophobic interactions: H:Y.28, H:A.96
- Hydrogen bonds: H:I.86, H:G.92, H:K.93, H:G.94, H:L.95, H:A.96, H:T.97, H:N.124, H:K.126, H:K.126
- Salt bridges: H:K.126, H:H.129, H:K.133
COA.18: 18 residues within 4Å:- Chain I: Y.28, W.29, Q.83, I.84, I.85, I.86, Y.90, Q.91, G.92, K.93, G.94, L.95, A.96, I.119, N.124, E.125, K.126, Y.131
10 PLIP interactions:10 interactions with chain I- Hydrophobic interactions: I:Y.28, I:A.96, I:K.126
- Hydrogen bonds: I:I.86, I:G.92, I:G.94, I:L.95, I:A.96
- Salt bridges: I:K.126, I:K.126
COA.20: 22 residues within 4Å:- Chain J: Y.28, W.29, Q.83, I.84, I.85, I.86, Q.91, G.92, K.93, G.94, L.95, A.96, T.97, I.119, V.120, N.124, E.125, K.126, H.129, I.130, Y.131, K.133
19 PLIP interactions:19 interactions with chain J- Hydrophobic interactions: J:Q.91
- Hydrogen bonds: J:I.84, J:I.84, J:I.84, J:I.86, J:I.86, J:G.92, J:G.92, J:G.94, J:L.95, J:A.96, J:T.97, J:T.97, J:E.125, J:Y.131
- Salt bridges: J:K.126, J:K.126, J:H.129, J:K.133
COA.22: 21 residues within 4Å:- Chain K: Y.28, W.29, Q.83, I.84, I.85, I.86, Q.91, G.92, K.93, G.94, L.95, A.96, T.97, I.119, V.120, N.124, E.125, K.126, H.129, Y.131, K.133
18 PLIP interactions:18 interactions with chain K- Hydrophobic interactions: K:Y.28, K:A.96, K:K.126
- Hydrogen bonds: K:Y.28, K:I.86, K:G.92, K:G.94, K:L.95, K:A.96, K:T.97, K:T.97, K:E.125, K:E.125, K:K.126, K:K.126, K:Y.131
- Salt bridges: K:K.126, K:K.133
COA.24: 19 residues within 4Å:- Chain L: Y.28, I.84, I.85, I.86, Q.91, G.92, K.93, G.94, L.95, A.96, T.97, V.120, N.124, K.126, A.127, H.129, I.130, Y.131, K.133
15 PLIP interactions:15 interactions with chain L- Hydrophobic interactions: L:Y.28, L:A.96
- Hydrogen bonds: L:I.86, L:G.92, L:K.93, L:G.94, L:L.95, L:A.96, L:T.97, L:N.124, L:K.126, L:K.126
- Salt bridges: L:K.126, L:H.129, L:K.133
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sugiyama, S. et al., Molecular mechanism underlying promiscuous polyamine recognition by spermidine acetyltransferase. Int.J.Biochem.Cell Biol. (2016)
- Release Date
- 2015-09-02
- Peptides
- Spermidine N1-acetyltransferase: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
CC
BD
DE
AF
CG
BH
DI
AJ
CK
BL
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-12-mer
- Ligands
- 12 x SPD: SPERMIDINE(Non-covalent)
- 12 x COA: COENZYME A(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sugiyama, S. et al., Molecular mechanism underlying promiscuous polyamine recognition by spermidine acetyltransferase. Int.J.Biochem.Cell Biol. (2016)
- Release Date
- 2015-09-02
- Peptides
- Spermidine N1-acetyltransferase: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
CC
BD
DE
AF
CG
BH
DI
AJ
CK
BL
D