SMTL ID : 3ww9.1

Crystal structure of the computationally designed Pizza6 protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.33 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: S.5, N.6, T.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.6, A:N.6, A:T.7 SO4.2: 5 residues within 4Å: Chain A: T.14, G.15, R.39, Q.50 Ligands: GOL.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.14, A:Q.50 Salt bridges: A:R.39 SO4.3: 1 residues within 4Å: Chain A: G.46 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.46 Water bridges: A:S.47, A:K.252

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 8 residues within 4Å: Chain A: S.5, Y.199, K.210, L.221, V.240, L.253, A.254, A.255 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.5, A:K.210, A:K.210 Water bridges: A:Y.199, A:G.238 GOL.5: 2 residues within 4Å: Chain A: N.79, N.80 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.79, A:N.80 Water bridges: A:L.100 GOL.6: 6 residues within 4Å: Chain A: G.15, L.16, N.17, N.37, R.39 Ligands: SO4.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.16, A:N.37 Water bridges: A:N.37 GOL.7: 4 residues within 4Å: Chain A: H.119, T.144, N.146, H.161 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.119, A:N.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Voet, A.R.D. et al., Computational design of a self-assembling symmetrical beta-propeller protein. Proc.Natl.Acad.Sci.USA (2014)

Release Date

2014-10-08

Peptides

pizza6 protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

pizza6 protein