SMTL ID : 3wxk.1 (1 other biounit)

Crystal structure of trypanosoma brucei gambiense glycerol kinase in complex with glycerol

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.37 Å

Oligo State

homo-dimer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: Q.89, R.90, E.91, W.110, D.260 Ligands: GOL.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.90, A:R.90, A:E.91, A:D.260 GOL.2: 6 residues within 4Å: Chain A: W.110, G.281, T.282, G.283, F.285 Ligands: GOL.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.282, A:T.282 GOL.3: 8 residues within 4Å: Chain B: Q.89, R.90, E.91, W.110, Y.145, D.260, Q.261, F.285 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.90, B:R.90, B:Y.145, B:D.260, B:Q.261

2 x HEZ: HEXANE-1,6-DIOL(Non-covalent)

HEZ.4: 4 residues within 4Å: Chain B: W.110, N.111, A.324 Ligands: HEZ.5 No protein-ligand interaction detected (PLIP) HEZ.5: 6 residues within 4Å: Chain B: Y.145, F.285, A.322, I.323, A.324 Ligands: HEZ.4 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:Y.145, B:F.285, B:A.322 Hydrogen bonds: B:I.323

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Balogun, E.O. et al., Molecular basis for the reverse reaction of African human trypanosomes glycerol kinase. Mol.Microbiol. (2014)

Release Date

2014-12-24

Peptides

Glycerol kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glycerol kinase

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