SMTL ID : 3x30.1

Crystal structure of metallo-beta-lactamase from Thermotoga maritima

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

homo-trimer

Ligands

3 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 6 residues within 4Å: Chain A: H.9, D.53, H.54, D.142, H.191 Ligands: NI.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.53, A:H.54, A:H.191, H2O.5, H2O.7 MN.3: 6 residues within 4Å: Chain B: H.9, D.53, H.54, D.142, H.191 Ligands: NI.4 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.53, B:H.54, B:H.191, H2O.11, H2O.13 MN.5: 6 residues within 4Å: Chain C: H.9, D.53, H.54, D.142, H.191 Ligands: NI.6 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.53, C:H.54, C:H.191, H2O.17, H2O.19

3 x NI: NICKEL (II) ION(Non-covalent)

NI.2: 5 residues within 4Å: Chain A: H.49, H.51, H.109, D.142 Ligands: MN.1 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.49, A:H.51, A:H.109, A:D.142, H2O.5, H2O.5 NI.4: 5 residues within 4Å: Chain B: H.49, H.51, H.109, D.142 Ligands: MN.3 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.49, B:H.51, B:H.109, B:D.142, H2O.11, H2O.11 NI.6: 5 residues within 4Å: Chain C: H.49, H.51, H.109, D.142 Ligands: MN.5 6 PLIP interactions: 4 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:H.49, C:H.51, C:H.109, C:D.142, H2O.17, H2O.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Choi, H.J. et al., Crystal structure of metallo-beta-lactamase from Thermotoga maritima. To be Published

Release Date

2016-02-17

Peptides

UPF0173 metal-dependent hydrolase TM_1162: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

UPF0173 metal-dependent hydrolase TM_1162

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