- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x FE: FE (III) ION(Non-covalent)
- 4 x OMD: 2-(3,6-DIHYDROXYPHENYL)ACETIC ACID(Non-covalent)
OMD.2: 13 residues within 4Å:- Chain A: H.288, P.291, F.314, P.328, W.329, H.331, E.337, M.339, Y.346, A.348, H.367, M.394
- Ligands: FE.1
10 PLIP interactions:10 interactions with chain A- Hydrophobic interactions: A:F.314, A:P.328, A:P.328
- Hydrogen bonds: A:Y.346, A:Y.346
- Water bridges: A:Y.346, A:K.349, A:H.361
- Salt bridges: A:K.349
- pi-Stacking: A:W.329
OMD.8: 12 residues within 4Å:- Chain D: H.288, P.291, P.328, W.329, H.331, E.337, M.339, Y.346, A.348, H.367, M.394
- Ligands: FE.7
6 PLIP interactions:6 interactions with chain D- Hydrophobic interactions: D:P.291, D:P.328, D:P.328, D:W.329, D:W.329
- Hydrogen bonds: D:Y.346
OMD.10: 13 residues within 4Å:- Chain E: H.288, P.291, F.314, P.328, W.329, H.331, E.337, M.339, Y.346, A.348, H.367, M.394
- Ligands: FE.9
13 PLIP interactions:13 interactions with chain E- Hydrophobic interactions: E:P.291, E:P.291, E:F.314, E:P.328, E:P.328, E:W.329, E:W.329
- Hydrogen bonds: E:Y.346
- Water bridges: E:H.288, E:K.349, E:K.349, E:K.349
- Salt bridges: E:K.349
OMD.12: 14 residues within 4Å:- Chain F: H.288, P.291, F.314, P.328, W.329, H.331, E.337, M.339, Y.346, A.348, K.349, H.367, M.394
- Ligands: FE.11
9 PLIP interactions:9 interactions with chain F- Hydrophobic interactions: F:P.291, F:F.314, F:P.328, F:P.328, F:W.329, F:W.329
- Hydrogen bonds: F:Y.346
- Water bridges: F:K.349
- Salt bridges: F:K.349
- 2 x HMQ: 2-[(6R)-6-(dioxidanyl)-6-oxidanyl-3-oxidanylidene-cyclohexa-1,4-dien-1-yl]ethanoic acid(Non-covalent)
HMQ.4: 13 residues within 4Å:- Chain A: F.52
- Chain B: H.288, P.291, P.328, W.329, H.331, E.337, M.339, Y.346, A.348, H.367, M.394
- Ligands: FE.3
9 PLIP interactions:9 interactions with chain B- Hydrophobic interactions: B:P.291, B:P.328, B:P.328, B:W.329
- Hydrogen bonds: B:Y.346, B:Y.346
- Water bridges: B:N.333, B:H.361
- Salt bridges: B:K.349
HMQ.6: 14 residues within 4Å:- Chain B: F.52
- Chain C: H.288, P.291, F.314, P.328, W.329, H.331, E.337, M.339, Y.346, A.348, H.367, M.394
- Ligands: FE.5
11 PLIP interactions:11 interactions with chain C- Hydrophobic interactions: C:P.291, C:P.291, C:F.314, C:P.328, C:P.328, C:W.329
- Hydrogen bonds: C:N.333, C:Y.346, C:Y.346
- Water bridges: C:H.361
- Salt bridges: C:K.349
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jeoung, J.-H. et al., Visualizing the Substrate-, Superoxo-, Alkylperoxo- and Product-Bound States at the Non-Heme Fe(II) Site of Homogentisate Dioxygenase. Proc.Natl.Acad.Sci.USA (2013)
- Release Date
- 2013-07-24
- Peptides
- HOMOGENTISATE 1,2-DIOXYGENASE: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
JB
FC
LD
HE
IF
K
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x FE: FE (III) ION(Non-covalent)
- 4 x OMD: 2-(3,6-DIHYDROXYPHENYL)ACETIC ACID(Non-covalent)
- 2 x HMQ: 2-[(6R)-6-(dioxidanyl)-6-oxidanyl-3-oxidanylidene-cyclohexa-1,4-dien-1-yl]ethanoic acid(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jeoung, J.-H. et al., Visualizing the Substrate-, Superoxo-, Alkylperoxo- and Product-Bound States at the Non-Heme Fe(II) Site of Homogentisate Dioxygenase. Proc.Natl.Acad.Sci.USA (2013)
- Release Date
- 2013-07-24
- Peptides
- HOMOGENTISATE 1,2-DIOXYGENASE: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
JB
FC
LD
HE
IF
K