SMTL ID : 3zec.1

Fic protein from SHEWANELLA ONEIDENSIS (E73G mutant) in complex with AMPPNP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 19 residues within 4Å: Chain A: S.75, I.78, G.79, L.151, Y.161, E.201, A.202, H.204, D.208, G.209, N.210, G.211, R.212, R.215, Y.246, Y.247, L.250, L.251 Ligands: MG.2 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:S.75, A:I.78, A:E.201, A:G.209, A:N.210, A:N.210, A:G.211, A:R.212, A:R.212, A:R.215, A:R.215, A:Y.246, A:Y.246, A:Y.247 Water bridges: A:G.79, A:N.80, A:N.80, A:Y.247 Salt bridges: A:H.204 pi-Stacking: A:Y.247 ANP.3: 18 residues within 4Å: Chain B: S.75, I.78, G.79, L.151, Y.161, E.201, A.202, H.204, D.208, G.209, N.210, G.211, R.212, R.215, Y.246, Y.247, L.250, L.251 20 PLIP interactions: 20 interactions with chain B Hydrogen bonds: B:S.75, B:I.78, B:G.79, B:E.201, B:G.209, B:N.210, B:N.210, B:G.211, B:R.212, B:R.212, B:R.212, B:R.215, B:R.215, B:Y.246, B:Y.246, B:Y.247 Water bridges: B:T.149, B:T.149 Salt bridges: B:H.204 pi-Stacking: B:Y.247

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: D.208 Ligands: ANP.1 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.208, H2O.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goepfert, A. et al., Conserved Inhibitory Mechanism and Competent ATP Binding Mode for Adenylyltransferases with Fic Fold. Plos One (2013)

Release Date

2013-06-19

Peptides

ADENOSINE MONOPHOSPHATE-PROTEIN TRANSFERASE SOFIC: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ADENOSINE MONOPHOSPHATE-PROTEIN TRANSFERASE SOFIC