SMTL ID : 3zh9.1

Bacillus subtilis DNA clamp loader delta protein (YqeN)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: E.24, Y.26, H.181, L.182, S.183, H.285 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.24, A:L.182, A:S.183 Water bridges: A:S.183, A:S.183 Salt bridges: A:H.181, A:H.285 SO4.2: 3 residues within 4Å: Chain A: R.199, E.200, E.201 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.200, A:E.201 SO4.4: 5 residues within 4Å: Chain A: H.181, K.283, V.284, H.285, R.288 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.285, A:H.285 Salt bridges: A:H.181, A:H.285, A:R.288 SO4.6: 3 residues within 4Å: Chain A: R.127, K.128, K.129 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.129 Water bridges: A:L.130 Salt bridges: A:K.128 SO4.7: 4 residues within 4Å: Chain A: V.211, A.212, R.213 Ligands: SO4.12 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.213 Water bridges: A:N.218, A:N.218, A:N.218 SO4.9: 3 residues within 4Å: Chain A: E.43, T.44, M.72 1 PLIP interactions: 1 interactions with chain A Water bridges: A:M.72 SO4.12: 5 residues within 4Å: Chain A: H.173, L.177, K.208, R.213 Ligands: SO4.7 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.213, A:R.213 Salt bridges: A:H.173, A:R.213

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: R.229, R.231, T.232 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.231, A:T.232 GOL.5: 5 residues within 4Å: Chain A: R.199, T.203, D.205, D.206, M.209 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.199, A:T.203, A:T.203 GOL.8: 3 residues within 4Å: Chain A: Q.107, K.136, H.137 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.107, A:K.136 GOL.10: 2 residues within 4Å: Chain A: K.11, E.13 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.11, A:K.11, A:E.13 GOL.11: 4 residues within 4Å: Chain A: K.45, L.49, S.50, V.51 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.45, A:V.51, A:V.51 GOL.13: 7 residues within 4Å: Chain A: K.23, E.145, A.279, S.280, K.283, V.284, H.285 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.279, A:H.285 GOL.14: 2 residues within 4Å: Chain A: I.95, E.96 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Afonso, J.P. et al., Insights Into the Structure and Assembly of the Bacillus Subtilis Clamp-Loader Complex and its Interaction with the Replicative Helicase. Nucleic Acids Res. (2013)

Release Date

2013-04-03

Peptides

DELTA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

DELTA