- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.63 Å
- Oligo State
- homo-11-mer
- Ligands
- 11 x NA: SODIUM ION(Non-functional Binders)
- 12 x DMU: DECYL-BETA-D-MALTOPYRANOSIDE(Non-covalent)
DMU.2: 6 residues within 4Å:- Chain A: M.1, I.9
- Chain B: D.2, C.13
- Ligands: DMU.5, DMU.23
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:I.9, A:I.9
- Hydrogen bonds: A:M.1
DMU.3: 9 residues within 4Å:- Chain A: K.7, Y.80, A.81, N.82, L.85, S.86, G.89
- Chain B: Y.80
- Chain K: K.87
7 PLIP interactions:3 interactions with chain A, 4 interactions with chain K- Hydrogen bonds: A:K.7, A:K.7, K:K.87, K:K.87, K:K.87, K:K.87
- Water bridges: A:N.82
DMU.5: 8 residues within 4Å:- Chain B: M.1
- Chain C: M.1, D.2, T.5, I.9, C.13
- Ligands: DMU.2, DMU.7
6 PLIP interactions:5 interactions with chain C, 1 interactions with chain B- Hydrophobic interactions: C:I.9, C:I.9
- Hydrogen bonds: C:D.2, C:D.2, C:T.5, B:M.1
DMU.7: 6 residues within 4Å:- Chain D: T.5, I.9, C.13, V.16
- Ligands: DMU.5, DMU.9
3 PLIP interactions:3 interactions with chain D- Hydrophobic interactions: D:I.9, D:I.9, D:V.16
DMU.9: 10 residues within 4Å:- Chain D: M.1, I.9, C.13
- Chain E: M.1, D.2, T.5, I.9, C.13
- Ligands: DMU.7, DMU.11
6 PLIP interactions:4 interactions with chain E, 2 interactions with chain D- Hydrophobic interactions: E:I.9, D:I.9
- Hydrogen bonds: E:D.2, E:D.2, E:T.5, D:M.1
DMU.11: 9 residues within 4Å:- Chain E: M.1, I.9
- Chain F: M.1, D.2, T.5, I.9, C.13
- Ligands: DMU.9, DMU.13
5 PLIP interactions:3 interactions with chain E, 2 interactions with chain F- Hydrophobic interactions: E:I.9, E:I.9, F:I.9
- Hydrogen bonds: E:M.1, F:T.5
DMU.13: 5 residues within 4Å:- Chain F: I.9, C.13
- Chain G: I.9
- Ligands: DMU.11, DMU.15
3 PLIP interactions:1 interactions with chain F, 2 interactions with chain G- Hydrophobic interactions: F:I.9, G:I.9, G:I.9
DMU.15: 10 residues within 4Å:- Chain G: M.1, I.9
- Chain H: M.1, D.2, T.5, I.9, C.13, V.16
- Ligands: DMU.13, DMU.17
7 PLIP interactions:5 interactions with chain H, 2 interactions with chain G- Hydrophobic interactions: H:I.9, H:V.16, G:I.9
- Hydrogen bonds: H:D.2, H:D.2, H:T.5, G:M.1
DMU.17: 9 residues within 4Å:- Chain H: M.1
- Chain I: M.1, D.2, T.5, I.9, C.13, V.16
- Ligands: DMU.15, DMU.19
7 PLIP interactions:6 interactions with chain I, 1 interactions with chain H- Hydrophobic interactions: I:I.9, I:I.9, I:V.16
- Hydrogen bonds: I:M.1, I:M.1, I:D.2, H:M.1
DMU.19: 6 residues within 4Å:- Chain I: C.13
- Chain J: I.9, C.13
- Ligands: DMU.17, DMU.21, DMU.23
No protein-ligand interaction detected (PLIP)DMU.21: 8 residues within 4Å:- Chain J: M.1, T.5, I.9, C.13
- Chain K: T.5, I.9
- Ligands: DMU.19, DMU.23
4 PLIP interactions:2 interactions with chain J, 2 interactions with chain K- Hydrogen bonds: J:M.1, J:T.5
- Hydrophobic interactions: K:I.9, K:I.9
DMU.23: 8 residues within 4Å:- Chain A: T.5, I.9, V.16
- Chain K: M.1, C.13
- Ligands: DMU.2, DMU.19, DMU.21
4 PLIP interactions:2 interactions with chain K, 2 interactions with chain A- Hydrogen bonds: K:M.1, K:T.5
- Hydrophobic interactions: A:I.9, A:V.16
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Schulz, S. et al., A new type of Na(+)-driven ATP synthase membrane rotor with a two-carboxylate ion-coupling motif. PLoS Biol. (2013)
- Release Date
- 2013-05-29
- Peptides
- ATP SYNTHASE SUBUNIT C: ABCDEFGHIJK
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
K - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.63 Å
- Oligo State
- homo-11-mer
- Ligands
- 11 x NA: SODIUM ION(Non-functional Binders)
- 12 x DMU: DECYL-BETA-D-MALTOPYRANOSIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Schulz, S. et al., A new type of Na(+)-driven ATP synthase membrane rotor with a two-carboxylate ion-coupling motif. PLoS Biol. (2013)
- Release Date
- 2013-05-29
- Peptides
- ATP SYNTHASE SUBUNIT C: ABCDEFGHIJK
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
K - Membrane
-
We predict this structure to be a membrane protein.