SMTL ID : 3zlk.2 (1 other biounit)

Pseudomonas aeruginosa RmlA in complex with allosteric inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-tetramer

Ligands

4 x Y46: N-(6-AMINO-1-BENZYL-2,4-DIOXO-1,2,3,4-TETRAHYDROPYRIMIDIN-5-YL)BENZENESULFONAMIDE(Non-covalent)

Y46.1: 16 residues within 4Å: Chain A: Y.48, S.51, T.52, L.55, Y.123, Y.124, G.125, F.128, H.129, K.259, V.260, A.261, E.265, I.266, R.269 Chain C: R.229 13 PLIP interactions: 10 interactions with chain A, 3 interactions with chain C Hydrophobic interactions: A:L.55, A:L.55, A:V.260, A:A.261, A:I.266, A:R.269 Hydrogen bonds: A:G.125, A:K.259, A:A.261 Water bridges: A:C.262, C:R.229, C:R.229 pi-Cation interactions: C:R.229 Y46.3: 14 residues within 4Å: Chain B: S.51, L.55, Y.123, Y.124, G.125, F.128, H.129, K.259, V.260, A.261, E.265, I.266, R.269 Chain D: R.229 15 PLIP interactions: 11 interactions with chain B, 4 interactions with chain D Hydrophobic interactions: B:L.55, B:L.55, B:V.260, B:A.261, B:I.266, B:R.269 Hydrogen bonds: B:K.259, B:A.261 Water bridges: B:G.125, B:F.128, B:C.262, D:R.229, D:R.229, D:G.230 pi-Cation interactions: D:R.229 Y46.5: 16 residues within 4Å: Chain A: R.229 Chain C: Y.48, S.51, T.52, L.55, Y.123, Y.124, G.125, F.128, H.129, K.259, V.260, A.261, E.265, I.266, R.269 14 PLIP interactions: 3 interactions with chain A, 11 interactions with chain C Water bridges: A:R.229, A:R.229, C:C.262, C:E.265 pi-Cation interactions: A:R.229 Hydrophobic interactions: C:L.55, C:L.55, C:V.260, C:A.261, C:I.266, C:R.269 Hydrogen bonds: C:G.125, C:K.259, C:A.261 Y46.7: 14 residues within 4Å: Chain B: R.229 Chain D: S.51, L.55, Y.123, Y.124, G.125, F.128, H.129, K.259, V.260, A.261, E.265, I.266, R.269 15 PLIP interactions: 11 interactions with chain D, 4 interactions with chain B Hydrophobic interactions: D:L.55, D:L.55, D:V.260, D:A.261, D:I.266, D:R.269 Hydrogen bonds: D:K.259, D:A.261 Water bridges: D:G.125, D:F.128, D:C.262, B:R.229, B:R.229, B:G.230 pi-Cation interactions: B:R.229

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain A: H.126, D.127 Chain C: G.228, R.229, G.230 Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain B: H.126, D.127 Chain D: G.228, R.229, G.230 Ligand excluded by PLIP CL.6: 5 residues within 4Å: Chain A: G.228, R.229, G.230 Chain C: H.126, D.127 Ligand excluded by PLIP CL.8: 5 residues within 4Å: Chain B: G.228, R.229, G.230 Chain D: H.126, D.127 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Alphey, M.S. et al., Allosteric competitive inhibitors of the glucose-1-phosphate thymidylyltransferase (RmlA) from Pseudomonas aeruginosa. ACS Chem. Biol. (2013)

Release Date

2013-02-20

Peptides

GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
C

D
D

GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE

Related Entries With Identical Sequence