SMTL ID : 3zmi.1

Structure of E.coli rhomboid protease GlpG in complex with monobactam L29

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x L6C: phenyl N-[(1R)-3-oxidanylidene-1-phenyl-propyl]carbamate(Covalent)

L6C.1: 10 residues within 4Å: Chain A: M.58, H.59, N.63, W.66, S.110, V.113, Y.114, M.117, W.145, H.163 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.113, A:W.145, A:W.145, A:W.145 Hydrogen bonds: A:N.63 pi-Stacking: A:W.66, A:Y.114

6 x BNG: nonyl beta-D-glucopyranoside(Non-functional Binders)(Non-covalent)

BNG.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) BNG.3: 4 residues within 4Å: Chain A: F.48, A.51, A.91 Ligands: BNG.5 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.48, A:A.51, A:A.91 BNG.4: 1 residues within 4Å: Chain A: L.65 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.65 BNG.5: 3 residues within 4Å: Chain A: A.12 Ligands: BNG.3, BNG.6 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:A.12 BNG.6: 3 residues within 4Å: Chain A: A.12, V.16 Ligands: BNG.5 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:A.12, A:V.16 BNG.7: 1 residues within 4Å: Chain A: D.37 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vinothkumar, K.R. et al., Structure of Rhomboid Protease in Complex with Beta-Lactam Inhibitors Defines the S2' Cavity. Structure (2013)

Release Date

2013-05-22

Peptides

RHOMBOID PROTEASE GLPG: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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RHOMBOID PROTEASE GLPG

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