SMTL ID : 3zmj.1

Structure of E.coli rhomboid protease GlpG in complex with monobactam L61

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x L61: 2-methylpropyl N-[(1R)-3-oxidanylidene-1-phenyl-propyl]carbamate(Covalent)

L61.1: 13 residues within 4Å: Chain A: M.58, H.59, F.62, N.63, W.66, S.110, V.113, Y.114, M.117, W.145, M.156, H.163 Ligands: CL.8 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:M.58, A:F.62, A:W.66, A:V.113, A:Y.114, A:W.145, A:W.145 Hydrogen bonds: A:N.63

5 x BNG: nonyl beta-D-glucopyranoside(Non-covalent)

BNG.2: 1 residues within 4Å: Chain A: V.176 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.176 BNG.3: 1 residues within 4Å: Chain A: F.44 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.44 BNG.4: 4 residues within 4Å: Chain A: L.30, F.36, L.40, R.46 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.30, A:F.36, A:L.40 BNG.5: 6 residues within 4Å: Chain A: M.9, F.48, T.49, A.51, T.87, A.91 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.48, A:A.51, A:T.87, A:A.91 BNG.6: 1 residues within 4Å: Chain A: L.65 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.65

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 3 residues within 4Å: Chain A: R.1, A.2, W.68 Ligand excluded by PLIP CL.8: 6 residues within 4Å: Chain A: S.110, M.156, S.157, M.158, H.163 Ligands: L61.1 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain A: K.82, R.123, D.177 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vinothkumar, K.R. et al., Structure of Rhomboid Protease in Complex with Beta-Lactam Inhibitors Defines the S2' Cavity. Structure (2013)

Release Date

2013-05-22

Peptides

RHOMBOID PROTEASE GLPG: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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RHOMBOID PROTEASE GLPG

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