SMTL ID : 3znr.1 (2 other biounits)

HDAC7 bound with inhibitor TMP269

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: D.227, H.229, D.321 Ligands: NU9.5 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.227, A:D.227, A:H.229, A:D.321 ZN.2: 4 residues within 4Å: Chain A: C.53, C.55, H.61, C.138 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.53, A:C.55, A:H.61, A:C.138

2 x K: POTASSIUM ION(Non-covalent)

K.3: 6 residues within 4Å: Chain A: D.225, D.227, H.229, S.248, L.249, H.250 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.225, A:D.227, A:H.229, A:S.248 K.4: 4 residues within 4Å: Chain A: F.238, D.241, V.244, F.275 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:F.238, A:V.244, H2O.14, H2O.15

1 x NU9: N-{[4-(4-PHENYL-1,3-THIAZOL-2-YL)TETRAHYDRO-2H-PYRAN-4-YL]METHYL}-3-[5-(TRIFLUOROMETHYL)-1,2,4-OXADIAZOL-3-YL]BENZAMIDE(Non-covalent)

NU9.5: 20 residues within 4Å: Chain A: P.62, E.63, R.67, P.187, H.189, H.190, G.198, F.199, C.200, D.227, H.229, F.258, D.321, P.329, L.330, E.360, G.361, G.362, H.363 Ligands: ZN.1 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:P.62, A:P.62, A:E.63, A:F.199, A:F.199, A:F.258, A:F.258, A:F.258, A:H.363 pi-Stacking: A:F.199, A:H.363 Halogen bonds: A:D.227

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lobera, M. et al., Selective Class Iia Histone Deacetylase Inhibition Via a Non-Chelating Zinc Binding Group. Nat.Chem.Biol. (2013)

Release Date

2013-03-27

Peptides

HISTONE DEACETYLASE 7: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

HISTONE DEACETYLASE 7

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