SMTL ID : 3zpq.2 (1 other biounit)

Thermostabilised turkey beta1 adrenergic receptor with 4-(piperazin-1- yl)-1H-indole bound (compound 19)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

2 x Y01: CHOLESTEROL HEMISUCCINATE(Non-covalent)

Y01.1: 5 residues within 4Å: Chain A: R.175, A.176, I.179, A.180 Ligands: 2CV.7 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.176, A:I.179, A:I.179, A:A.180 Y01.2: 8 residues within 4Å: Chain A: L.48, C.55, L.93, R.125, K.129, I.132, W.136 Ligands: 2CV.6 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.48, A:L.93, A:K.129, A:W.136, A:W.136 Salt bridges: A:K.129, A:K.129

5 x 2CV: HEGA-10(Non-covalent)

2CV.3: 9 residues within 4Å: Chain A: A.197, Y.201, A.204, M.225, H.228, L.231, K.232, G.235, M.238 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.197, A:Y.201, A:A.204, A:H.228 2CV.4: 6 residues within 4Å: Chain A: R.109, A.112, Y.119, E.227, A.230, L.231 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:E.227, A:A.230, A:L.231, A:L.231 2CV.5: 4 residues within 4Å: Chain A: Y.201, K.232, G.235, G.239 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:K.232 2CV.6: 5 residues within 4Å: Chain A: V.130, C.133, W.136, A.140 Ligands: Y01.2 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:W.136 2CV.7: 9 residues within 4Å: Chain A: V.142, P.146, W.151, R.153, D.154, N.174, A.176, A.180 Ligands: Y01.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:P.146, A:W.151, A:W.151, A:A.176

2 x NA: SODIUM ION(Non-functional Binders)

NA.8: 2 residues within 4Å: Chain A: D.57, S.98 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.57, A:S.98 NA.10: 4 residues within 4Å: Chain A: C.162, Y.163, D.165, C.168 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:C.162

1 x XF5: 4-(PIPERAZIN-1-YL)-1H-INDOLE(Non-covalent)

XF5.9: 10 residues within 4Å: Chain A: D.91, V.92, F.171, S.181, S.185, W.245, F.248, F.249, N.252, N.271 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.92, A:F.171 Hydrogen bonds: A:S.181, A:S.181, A:N.271, A:N.271 pi-Stacking: A:F.249

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Christopher, J. et al., Biophysical Fragment Screening of the Beta1-Adrenergic Receptor: Identification of High Affinity Aryl Piperazine Leads Using Structure-Based Drug Design. J.Med.Chem. (2013)

Release Date

2013-04-03

Peptides

BETA-1 ADRENERGIC RECEPTOR: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Membrane

We predict this structure to be a membrane protein.
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BETA-1 ADRENERGIC RECEPTOR

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