SMTL ID : 3zq6.2 (1 other biounit)

ADP-ALF4 COMPLEX OF M. THERM. TRC40

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 21 residues within 4Å: Chain A: K.22, G.24, V.25, G.26, K.27, T.28, T.29, N.259, Q.260, V.297, P.298, L.299, L.300, K.302, E.303, A.304 Chain B: K.22, E.232, M.234 Ligands: ALF.2, MG.3 21 PLIP interactions: 15 interactions with chain A, 6 interactions with chain B Hydrogen bonds: A:K.22, A:G.24, A:V.25, A:G.26, A:K.27, A:T.28, A:T.29, A:T.29, A:N.259, A:P.298, A:L.300, A:A.304, A:A.304 Water bridges: A:Q.260, B:K.22, B:K.22, B:M.234, B:R.274 Salt bridges: A:K.27, B:K.22, B:K.22 ADP.5: 21 residues within 4Å: Chain A: K.22, E.232, M.234 Chain B: K.22, G.24, V.25, G.26, K.27, T.28, T.29, N.259, Q.260, V.297, P.298, L.299, L.300, K.302, E.303, A.304 Ligands: ALF.6, MG.7 21 PLIP interactions: 17 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:K.22, B:G.24, B:V.25, B:G.26, B:K.27, B:T.28, B:T.29, B:T.29, B:N.259, B:Q.260, B:P.298, B:L.300, B:A.304, B:A.304 Water bridges: B:S.55, B:Q.260, A:K.22, A:M.234 Salt bridges: B:K.27, A:K.22, A:K.22

2 x ALF: TETRAFLUOROALUMINATE ION(Non-covalent)

ALF.2: 10 residues within 4Å: Chain A: G.23, G.24, K.27, D.51, P.148 Chain B: K.22, G.23 Ligands: ADP.1, MG.3, K.4 No protein-ligand interaction detected (PLIP) ALF.6: 11 residues within 4Å: Chain A: K.22, G.23 Chain B: G.23, G.24, K.27, D.51, S.55, P.148 Ligands: ADP.5, MG.7, K.8 No protein-ligand interaction detected (PLIP)

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 5 residues within 4Å: Chain A: T.28, D.51, D.145 Ligands: ADP.1, ALF.2 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.28, H2O.4, H2O.4, H2O.4 MG.7: 3 residues within 4Å: Chain B: T.28 Ligands: ADP.5, ALF.6 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:T.28, H2O.5, H2O.5, H2O.5

2 x K: POTASSIUM ION(Non-covalent)

K.4: 5 residues within 4Å: Chain A: D.51, A.53, S.55 Chain B: E.238 Ligands: ALF.2 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Metal complexes: A:A.53, B:E.238 K.8: 5 residues within 4Å: Chain A: E.238 Chain B: D.51, A.53, S.55 Ligands: ALF.6 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Metal complexes: A:E.238, B:A.53, B:S.55

1 x ZN: ZINC ION(Non-covalent)

ZN.9: 4 residues within 4Å: Chain A: C.268, C.271 Chain B: C.268, C.271 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Metal complexes: A:C.268, A:C.271, B:C.268, B:C.271

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sherrill, J. et al., A Conserved Archaeal Pathway for Tail-Anchored Membrane Protein Insertion. Traffic (2011)

Release Date

2011-06-22

Peptides

PUTATIVE ARSENICAL PUMP-DRIVING ATPASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

PUTATIVE ARSENICAL PUMP-DRIVING ATPASE

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