SMTL ID : 3zs9.1

S. cerevisiae Get3-ADP-AlF4- complex with a cytosolic Get2 fragment

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-2-2-mer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 21 residues within 4Å: Chain A: G.28, V.29, G.30, K.31, T.32, T.33, N.272, Q.273, P.315, L.316, C.317, G.319, E.320, I.321, F.330 Chain B: K.26, E.245, L.247, R.291 Ligands: ALF.2, MG.3 22 PLIP interactions: 16 interactions with chain A, 6 interactions with chain B Hydrogen bonds: A:G.28, A:V.29, A:G.30, A:K.31, A:T.32, A:T.33, A:T.33, A:N.272, A:Q.273, A:P.315, A:C.317, A:I.321 Water bridges: A:T.33, A:D.57, A:I.321, B:K.26, B:K.26, B:L.247, B:R.291 Salt bridges: A:K.31, B:K.26, B:K.26 ADP.4: 21 residues within 4Å: Chain A: K.26, E.245, L.247, R.291 Chain B: G.28, V.29, G.30, K.31, T.32, T.33, N.272, Q.273, P.315, L.316, C.317, G.319, E.320, I.321, F.330 Ligands: ALF.5, MG.6 22 PLIP interactions: 5 interactions with chain A, 17 interactions with chain B Water bridges: A:K.26, A:L.247, A:R.291, B:T.32, B:T.33, B:D.57, B:I.321 Salt bridges: A:K.26, A:K.26, B:K.31 Hydrogen bonds: B:G.28, B:V.29, B:G.30, B:K.31, B:T.32, B:T.33, B:T.33, B:N.272, B:Q.273, B:P.315, B:C.317, B:I.321

2 x ALF: TETRAFLUOROALUMINATE ION(Non-covalent)

ALF.2: 10 residues within 4Å: Chain A: G.27, G.28, K.31, D.57, N.61, P.169 Chain B: K.26, G.27 Ligands: ADP.1, MG.3 No protein-ligand interaction detected (PLIP) ALF.5: 10 residues within 4Å: Chain A: K.26, G.27 Chain B: G.27, G.28, K.31, D.57, N.61, P.169 Ligands: ADP.4, MG.6 No protein-ligand interaction detected (PLIP)

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: T.32, D.57 Ligands: ADP.1, ALF.2 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.32, H2O.1, H2O.1, H2O.1 MG.6: 3 residues within 4Å: Chain B: T.32 Ligands: ADP.4, ALF.5 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:T.32, H2O.6, H2O.6, H2O.6

1 x ZN: ZINC ION(Non-covalent)

ZN.7: 4 residues within 4Å: Chain A: C.285, C.288 Chain B: C.285, C.288 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Metal complexes: B:C.285, B:C.288, A:C.285, A:C.288

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mariappan, M. et al., The Mechanism of Membrane-Associated Steps in Tail-Anchored Protein Insertion. Nature (2011)

Release Date

2011-09-07

Peptides

ATPASE GET3: AB
GOLGI TO ER TRAFFIC PROTEIN 2: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

ATPASE GET3

GOLGI TO ER TRAFFIC PROTEIN 2

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