SMTL ID : 4a30.1

CRYSTAL STRUCTURE OF LEISHMANIA MAJOR N-MYRISTOYLTRANSFERASE (NMT) WITH BOUND MYRISTOYL-COA AND A PYRAZOLE SULPHONAMIDE LIGAND

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: H.236, G.412, D.413 Ligands: QMI.3 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: V.148, E.182, F.309, Y.317, Y.365, L.435, V.436 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.182 Water bridges: A:Y.317, A:H.364, A:L.438

1 x QMI: 4-BROMO-2,6-DICHLORO-N-(1,3,5-TRIMETHYL-1H-PYRAZOL-4-YL)BENZENESULFONAMIDE(Non-covalent)

QMI.3: 17 residues within 4Å: Chain A: V.98, E.99, D.100, F.105, R.106, F.107, G.222, Y.234, H.236, F.249, S.347, L.358, Y.362, N.393, D.413, G.414 Ligands: CL.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:D.100, A:Y.234, A:F.249, A:L.358 Hydrogen bonds: A:S.347, A:N.393 Halogen bonds: A:Y.362, A:D.413

1 x MYA: TETRADECANOYL-COA(Non-covalent)

MYA.4: 31 residues within 4Å: Chain A: H.29, A.30, F.31, W.32, N.96, Y.97, V.98, I.183, N.184, F.185, L.186, C.187, V.188, R.193, E.194, K.195, R.196, L.197, A.198, P.199, I.202, T.206, V.209, N.210, W.215, Q.216, A.217, Y.219, T.220, L.225, Y.421 37 PLIP interactions: 37 interactions with chain A Hydrophobic interactions: A:W.32, A:W.32, A:Y.97, A:V.98, A:I.183, A:L.186, A:L.186, A:V.188, A:A.198, A:I.202, A:V.209, A:A.217, A:Y.219, A:Y.219, A:Y.421, A:Y.421 Hydrogen bonds: A:A.30, A:F.31, A:W.32, A:Y.97, A:F.185, A:L.186, A:L.186, A:V.188, A:R.193, A:R.193, A:E.194, A:R.196, A:L.197, A:A.198 Water bridges: A:K.195, A:K.195, A:R.196, A:R.196 Salt bridges: A:H.29, A:R.196, A:R.196

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brand, S. et al., Discovery of a novel class of orally active trypanocidal N-myristoyltransferase inhibitors. J. Med. Chem. (2012)

Release Date

2011-12-21

Peptides

GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE

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