SMTL ID : 4a51.5 (6 other biounits)

Crystal structure of human kinesin Eg5 in complex with 1-(3-(((2-Aminoethyl)thio)diphenylmethyl)phenyl)ethanone hydrochloride

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 13 residues within 4Å: Chain A: R.24, R.26, P.27, Q.106, T.107, G.108, T.109, G.110, K.111, T.112, F.113, E.118 Ligands: MG.2 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:R.24, A:G.108, A:T.109, A:G.110, A:K.111, A:T.112, A:F.113, A:E.118 Water bridges: A:K.111 Salt bridges: A:K.111 pi-Stacking: A:F.113, A:F.113

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: T.112 Ligands: ADP.1 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.112, H2O.1, H2O.1

1 x DQ8: 1-(3-{[(2-aminoethyl)sulfanyl](diphenyl)methyl}phenyl)ethanone(Non-covalent)

DQ8.3: 12 residues within 4Å: Chain A: T.112, E.116, G.117, E.118, R.119, A.133, P.137, L.160, Y.211, L.214, E.215, A.218 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:E.116, A:R.119, A:A.133, A:P.137, A:L.160, A:L.214, A:E.215, A:E.215 Hydrogen bonds: A:G.117

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 2 residues within 4Å: Chain A: C.43, G.73 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, F. et al., Triphenylbutanamines: Kinesin Spindle Protein Inhibitors with in Vivo Antitumor Activity. J.Med.Chem. (2012)

Release Date

2012-10-31

Peptides

KINESIN-LIKE PROTEIN KIF11: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

KINESIN-LIKE PROTEIN KIF11

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