SMTL ID : 4a9f.2 (1 other biounit)

N-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH 1-METHYLPYRROLIDIN-2-ONE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

homo-dimer

Ligands

2 x MB3: 1-methylpyrrolidin-2-one(Non-covalent)

MB3.1: 7 residues within 4Å: Chain A: P.52, F.53, V.57, L.62, L.64, C.106, N.110 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.62, A:L.64 Hydrogen bonds: A:N.110 MB3.3: 7 residues within 4Å: Chain B: P.52, F.53, V.57, L.62, L.64, C.106, N.110 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.62, B:L.64 Hydrogen bonds: B:N.110

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.82, R.83, N.86, Y.88 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.86 Water bridges: A:R.82, A:R.82 Salt bridges: A:R.82 SO4.4: 4 residues within 4Å: Chain B: R.82, R.83, N.86, Y.88 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.86 Water bridges: B:R.82, B:R.82 Salt bridges: B:R.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chung, C.W. et al., Fragment-Based Discovery of Bromodomain Inhibitors Part 1: Inhibitor Binding Modes and Implications for Lead Discovery. J.Med.Chem. (2012)

Release Date

2012-01-11

Peptides

BROMODOMAIN-CONTAINING PROTEIN 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
C

BROMODOMAIN-CONTAINING PROTEIN 2

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