SMTL ID : 4a9n.1 (1 other biounit)

N-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH N-cyclopropyl-5-(3,5- dimethyl-1,2-oxazol-4-yl)-2-methylbenzene-1-sulfonamide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 2 residues within 4Å: Chain A: H.68, K.72 1 PLIP interactions: 1 interactions with chain A Water bridges: A:H.68 EDO.2: 6 residues within 4Å: Chain A: I.70, I.71, K.72, Q.73, N.105 Chain B: Q.121 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.72, A:Q.73, A:N.105, A:N.105 EDO.3: 2 residues within 4Å: Chain A: Q.97 Chain B: K.125 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Water bridges: A:S.93, A:T.101 Hydrogen bonds: B:K.125 EDO.7: 4 residues within 4Å: Chain B: Q.48, F.49, W.51, M.119 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:W.51 EDO.8: 4 residues within 4Å: Chain A: K.125 Chain B: Q.97, N.100, T.101 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.100

2 x A9N: N-CYCLOPROP-2-EN-1-YL-5-(3,5-DIMETHYL-1,2-OXAZOL-4-YL)-2-METHYL-BENZENESULFONAMIDE(Non-covalent)

A9N.4: 9 residues within 4Å: Chain A: W.51, P.52, F.53, L.62, L.64, C.106, N.110, I.116, M.119 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.51, A:W.51, A:P.52, A:F.53, A:L.62, A:L.62, A:L.64, A:I.116 Hydrogen bonds: A:N.110 Water bridges: A:C.106 A9N.9: 11 residues within 4Å: Chain B: W.51, P.52, F.53, V.57, L.62, L.64, C.106, Y.109, N.110, I.116, M.119 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:W.51, B:W.51, B:P.52, B:F.53, B:L.62, B:L.62, B:L.64, B:Y.109, B:I.116, B:I.116 Hydrogen bonds: B:N.110

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 2 residues within 4Å: Chain A: W.51, R.54 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.54, A:R.54 Salt bridges: A:R.54 SO4.6: 3 residues within 4Å: Chain A: T.79, R.82, R.83 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.83, A:Y.88 Salt bridges: A:R.82, A:R.83 SO4.10: 3 residues within 4Å: Chain B: T.79, R.82, R.83 3 PLIP interactions: 3 interactions with chain B Water bridges: B:R.83 Salt bridges: B:R.82, B:R.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bamborough, P. et al., Fragment-Based Discovery of Bromodomain Inhibitors Part 2: Optimization of Phenylisoxazole Sulfonamides. J.Med.Chem. (2012)

Release Date

2012-02-08

Peptides

BROMODOMAIN CONTAINING 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

BROMODOMAIN CONTAINING 2

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