SMTL ID : 4aa7.2 (1 other biounit)

E.coli GlmU in complex with an antibacterial inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-trimer

Ligands

3 x R82: N-(2,4-dimethoxy-5-{[(2R)-2-methyl-2,3-dihydro-1H-indol-1-yl]sulfonyl}phenyl)acetamide(Non-covalent)

R82.1: 19 residues within 4Å: Chain A: C.160, N.161, Y.162, D.163, F.168, V.185, A.186 Chain B: W.224, R.226, P.227 Chain C: F.177, G.179, S.180, T.195, I.196, A.197, A.198, L.211, R.215 13 PLIP interactions: 8 interactions with chain C, 3 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: C:F.177, C:F.177, C:T.195, C:L.211, A:D.163, A:V.185, B:W.224, B:R.226 Hydrogen bonds: C:S.180, C:A.198, C:R.215, C:R.215, A:Y.162 R82.4: 19 residues within 4Å: Chain A: F.177, G.179, S.180, T.195, I.196, A.197, A.198, L.211, R.215 Chain B: C.160, N.161, Y.162, D.163, F.168, V.185, A.186 Chain C: W.224, R.226, P.227 13 PLIP interactions: 3 interactions with chain B, 8 interactions with chain A, 2 interactions with chain C Hydrophobic interactions: B:D.163, B:V.185, A:F.177, A:F.177, A:T.195, A:L.211, C:W.224, C:R.226 Hydrogen bonds: B:Y.162, A:S.180, A:A.198, A:R.215, A:R.215 R82.7: 19 residues within 4Å: Chain A: W.224, R.226, P.227 Chain B: F.177, G.179, S.180, T.195, I.196, A.197, A.198, L.211, R.215 Chain C: C.160, N.161, Y.162, D.163, F.168, V.185, A.186 13 PLIP interactions: 8 interactions with chain B, 3 interactions with chain C, 2 interactions with chain A Hydrophobic interactions: B:F.177, B:F.177, B:T.195, B:L.211, C:D.163, C:V.185, A:W.224, A:R.226 Hydrogen bonds: B:S.180, B:A.198, B:R.215, B:R.215, C:Y.162

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: R.108, K.126, Y.141, N.161, K.167 Chain C: H.138 10 PLIP interactions: 9 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:Y.141, A:N.161 Water bridges: A:R.108, A:R.108, A:K.167, A:K.167 Salt bridges: A:R.108, A:K.126, A:K.167, C:H.138 SO4.3: 3 residues within 4Å: Chain A: R.108, P.109, K.126 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.127 Salt bridges: A:R.108 SO4.5: 6 residues within 4Å: Chain A: H.138 Chain B: R.108, K.126, Y.141, N.161, K.167 10 PLIP interactions: 9 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Y.141, B:N.161 Water bridges: B:R.108, B:R.108, B:K.167, B:K.167 Salt bridges: B:R.108, B:K.126, B:K.167, A:H.138 SO4.6: 3 residues within 4Å: Chain B: R.108, P.109, K.126 2 PLIP interactions: 2 interactions with chain B Water bridges: B:K.127 Salt bridges: B:R.108 SO4.8: 6 residues within 4Å: Chain B: H.138 Chain C: R.108, K.126, Y.141, N.161, K.167 10 PLIP interactions: 9 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:Y.141, C:N.161 Water bridges: C:R.108, C:R.108, C:K.167, C:K.167 Salt bridges: C:R.108, C:K.126, C:K.167, B:H.138 SO4.9: 3 residues within 4Å: Chain C: R.108, P.109, K.126 2 PLIP interactions: 2 interactions with chain C Water bridges: C:K.127 Salt bridges: C:R.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Green, O.M. et al., Inhibitors of Acetyltransferase Domain of N-Acetylglucosamine-1-Phosphate-Uridyltransferase/ Glucosamine-1-Phosphate-Acetyltransferase (Glmu). Part 1: Hit to Lead Evaluation of a Novel Arylsulfonamide Series. Bioorg.Med.Chem.Lett. (2012)

Release Date

2012-08-15

Peptides

BIFUNCTIONAL PROTEIN GLMU: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

C
B

BIFUNCTIONAL PROTEIN GLMU

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