SMTL ID : 4ad2.3 (3 other biounits)

Structure of the GH99 endo-alpha-mannosidase from Bacteroides xylanisolvens in complex with glucose-1,3-isofagomine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x GLC: alpha-D-glucopyranose(Non-covalent)

GLC.1: 9 residues within 4Å: Chain A: H.60, H.63, W.126, I.294, R.295, E.333, H.335, E.336 Ligands: IFM.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.295 Water bridges: A:H.60, A:R.295

1 x IFM: 5-HYDROXYMETHYL-3,4-DIHYDROXYPIPERIDINE(Non-covalent)

IFM.2: 9 residues within 4Å: Chain A: Y.46, W.126, H.154, E.156, Y.195, Y.252, E.333, E.336 Ligands: GLC.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.195 Hydrogen bonds: A:Y.252 Water bridges: A:R.295, A:E.336, A:E.336, A:E.336, A:E.336, A:E.336

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thompson, A.J. et al., Structural and Mechanistic Insight Into N-Glycan Processing by Endo-Alpha-Mannosidase. Proc.Natl.Acad.Sci.USA (2012)

Release Date

2012-02-01

Peptides

GLYCOSYL HYDROLASE FAMILY 71: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

GLYCOSYL HYDROLASE FAMILY 71

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