SMTL ID : 4ads.2 (1 other biounit)

Crystal structure of plasmodial PLP synthase complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.61 Å

Oligo State

hetero-6-6-mer

Ligands

12 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: H.116, E.135, R.138, R.139 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:H.116, A:R.138, A:R.139 PO4.2: 7 residues within 4Å: Chain A: A.153, G.154, G.214, G.215, V.235, G.236, S.237 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.154, A:G.215, A:G.236, A:S.237 PO4.3: 4 residues within 4Å: Chain B: H.116, E.135, R.138, R.139 3 PLIP interactions: 3 interactions with chain B Salt bridges: B:H.116, B:R.138, B:R.139 PO4.4: 7 residues within 4Å: Chain B: A.153, G.154, G.214, G.215, V.235, G.236, S.237 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.154, B:G.215, B:G.236, B:S.237 PO4.5: 4 residues within 4Å: Chain C: H.116, E.135, R.138, R.139 3 PLIP interactions: 3 interactions with chain C Salt bridges: C:H.116, C:R.138, C:R.139 PO4.6: 7 residues within 4Å: Chain C: A.153, G.154, G.214, G.215, V.235, G.236, S.237 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:G.154, C:G.215, C:G.236, C:S.237 PO4.7: 4 residues within 4Å: Chain D: H.116, E.135, R.138, R.139 3 PLIP interactions: 3 interactions with chain D Salt bridges: D:H.116, D:R.138, D:R.139 PO4.8: 7 residues within 4Å: Chain D: A.153, G.154, G.214, G.215, V.235, G.236, S.237 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:G.154, D:G.215, D:G.236, D:S.237 PO4.9: 4 residues within 4Å: Chain E: H.116, E.135, R.138, R.139 3 PLIP interactions: 3 interactions with chain E Salt bridges: E:H.116, E:R.138, E:R.139 PO4.10: 7 residues within 4Å: Chain E: A.153, G.154, G.214, G.215, V.235, G.236, S.237 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:G.154, E:G.215, E:G.236, E:S.237 PO4.11: 4 residues within 4Å: Chain F: H.116, E.135, R.138, R.139 3 PLIP interactions: 3 interactions with chain F Salt bridges: F:H.116, F:R.138, F:R.139 PO4.12: 7 residues within 4Å: Chain F: A.153, G.154, G.214, G.215, V.235, G.236, S.237 4 PLIP interactions: 4 interactions with chain F Hydrogen bonds: F:G.154, F:G.215, F:G.236, F:S.237

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guedez, G. et al., Assembly of the Eukaryotic Plp-Synthase Complex from Plasmodium and Activation of the Pdx1 Enzyme. Structure (2012)

Release Date

2012-01-25

Peptides

PYRIDOXINE BIOSYNTHETIC ENZYME PDX1 HOMOLOGUE, PUTATIVE: ABCDEF
PDX2 PROTEIN: GHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

PYRIDOXINE BIOSYNTHETIC ENZYME PDX1 HOMOLOGUE, PUTATIVE

PDX2 PROTEIN

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