SMTL ID : 4ag6.2 (1 other biounit)

Structure of VirB4 of Thermoanaerobacter pseudethanolicus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: K.43, P.44, G.45, A.46, G.47, K.48, S.49 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.45, A:A.46, A:G.47, A:K.48, A:S.49 Water bridges: A:K.48, A:F.50 Salt bridges: A:K.48 SO4.2: 3 residues within 4Å: Chain A: R.203, G.207, A.208 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.208 Water bridges: A:R.203, A:R.203 Salt bridges: A:R.203 SO4.3: 3 residues within 4Å: Chain A: R.287, A.321, N.325 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.325 Water bridges: A:R.287, A:R.287 Salt bridges: A:R.287 SO4.4: 3 residues within 4Å: Chain A: R.166, N.254, R.258 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.254 Water bridges: A:Q.100, A:Q.100, A:Q.100, A:Q.100, A:Q.100 Salt bridges: A:R.258 SO4.5: 2 residues within 4Å: Chain A: R.287, Y.318 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.318 Salt bridges: A:R.287 SO4.6: 1 residues within 4Å: Chain B: Y.318 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wallden, K. et al., Structure of the Virb4 ATPase, Alone and Bound to the Core Complex of a Type Iv Secretion System. Proc.Natl.Acad.Sci.USA (2012)

Release Date

2012-07-04

Peptides

TYPE IV SECRETORY PATHWAY VIRB4 COMPONENTS-LIKE PROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

TYPE IV SECRETORY PATHWAY VIRB4 COMPONENTS-LIKE PROTEIN

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