SMTL ID : 4aj8.1

Crystallographic structure of thioredoxin from Litopenaeus vannamei (partially reduced).

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

homo-dimer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: K.41, E.44, Y.94 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.41, A:E.44, A:Y.94 GOL.7: 1 residues within 4Å: Chain B: E.44 2 PLIP interactions: 2 interactions with chain B Water bridges: B:E.44, B:E.44 GOL.8: 4 residues within 4Å: Chain B: Y.28, C.35, A.39, K.56 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.28 Water bridges: B:D.26, B:C.35 GOL.10: 2 residues within 4Å: Chain B: M.1, Q.47 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:M.1, B:M.1 Water bridges: B:Q.47

5 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 5 residues within 4Å: Chain A: D.26, Y.28, C.35, A.39, K.56 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.28 Water bridges: A:E.43 Salt bridges: A:K.56 ACT.3: 2 residues within 4Å: Chain A: F.11, N.69 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.11 Hydrogen bonds: A:N.69, A:N.69 ACT.4: 2 residues within 4Å: Chain A: M.1, E.43 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:M.1 ACT.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) ACT.9: 3 residues within 4Å: Chain B: M.49, D.51, K.105 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:K.105 Salt bridges: B:K.105

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 2 residues within 4Å: Chain B: K.13, E.17 2 PLIP interactions: 2 interactions with chain B Water bridges: B:Q.14 Salt bridges: B:K.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Campos-Acevedo, A.A. et al., Expression, Purification, Crystallization and X-Ray Crystallographic Studies of Different Redox States of the Active Site of Thioredoxin 1 from the Whiteleg Shrimp Litopenaeus Vannamei. Acta Crystallogr.,Sect.F (2013)

Release Date

2013-03-06

Peptides

THIOREDOXIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

THIOREDOXIN

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