SMTL ID : 4alo.1

STRUCTURE AND PROPERTIES OF H1 CRUSTACYANIN FROM LOBSTER HOMARUS AMERICANUS

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.37 Å

Oligo State

homo-dimer

Ligands

5 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 7 residues within 4Å: Chain A: Q.46, N.54, I.95, Y.97, F.134, F.136 Ligands: MPD.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Q.46, A:I.95, A:Y.97, A:F.134, A:F.136 Hydrogen bonds: A:Q.46, A:Y.97 Water bridges: A:N.54, A:R.79 MPD.2: 10 residues within 4Å: Chain A: N.43, Y.45, I.95, Y.97, S.100, F.101, A.103, S.120, F.134 Ligands: MPD.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.45, A:I.95, A:Y.97, A:F.101, A:A.103, A:F.134 Hydrogen bonds: A:N.43, A:N.43, A:S.100 MPD.6: 1 residues within 4Å: Chain A: K.149 No protein-ligand interaction detected (PLIP) MPD.7: 9 residues within 4Å: Chain B: Q.46, V.52, N.54, S.67, I.95, Y.97, F.134, F.136 Ligands: MPD.8 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:V.52, B:I.95 Hydrogen bonds: B:Q.46, B:Q.46 Water bridges: B:Q.37, B:N.54 MPD.8: 6 residues within 4Å: Chain B: N.43, R.79, Y.97, F.101, F.134 Ligands: MPD.7 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:Y.97, B:F.101, B:F.134

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: A.13, R.17, P.104, C.121 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.13 Salt bridges: A:R.17, A:H.92 SO4.9: 1 residues within 4Å: Chain B: K.166 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:K.166 SO4.11: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) SO4.12: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) SO4.13: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

3 x NA: SODIUM ION(Non-functional Binders)

NA.4: 6 residues within 4Å: Chain A: F.6, T.41, N.42, D.131, F.132, R.163 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.41, A:R.163 Water bridges: A:N.42 NA.5: 2 residues within 4Å: Chain A: V.34, R.138 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.138 NA.10: 3 residues within 4Å: Chain B: F.58, D.59, G.60 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:F.58, B:G.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferrari, M. et al., Structural Characterization of Recombinant Crustacyanin Subunits from the Lobster Homarus Americanus. Acta Crystallogr.,Sect.F (2012)

Release Date

2012-08-08

Peptides

H1 APOCRUSTACYANIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

H1 APOCRUSTACYANIN