- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.00 Å
- Oligo State
- homo-trimer
- Ligands
- 4 x U: RNA, 5'-R(*UP*AP*AP*CP*UP*UP*UP*GP*GP)-3'(Non-covalent)
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.5: 7 residues within 4Å:- Chain A: R.406, H.410, S.444, S.445, S.446, K.501
- Ligands: PO4.6
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:S.444, A:S.444, A:S.445, A:S.446
- Water bridges: A:R.406, A:R.406
- Salt bridges: A:R.406, A:H.410, A:K.501
PO4.6: 5 residues within 4Å:- Chain A: R.406, S.441, N.442, G.443
- Ligands: PO4.5
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.406, A:S.441, A:S.441, A:G.443
PO4.7: 9 residues within 4Å:- Chain B: Y.387, R.406, H.410, G.443, S.444, S.445, S.446, K.501
- Ligands: PO4.8
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:Y.387, B:S.445, B:S.446, B:S.446, B:S.446
- Salt bridges: B:R.406, B:H.410, B:K.501
PO4.8: 6 residues within 4Å:- Chain B: R.406, S.441, N.442, G.443, G.490
- Ligands: PO4.7
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.406, B:S.441, B:S.441, B:G.443
PO4.9: 9 residues within 4Å:- Chain C: Y.387, R.406, H.410, G.443, S.444, S.445, S.446, K.501
- Ligands: PO4.10
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:Y.387, C:S.445, C:S.446
- Water bridges: C:R.406
- Salt bridges: C:R.406, C:H.410, C:K.501
PO4.10: 4 residues within 4Å:- Chain C: R.406, S.441, G.443
- Ligands: PO4.9
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:G.443
- Salt bridges: C:R.406
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hardwick, S.W. et al., Crystal Structure of Caulobacter Crescentus Polynucleotide Phosphorylase Reveals a Mechanism of RNA Substrate Channelling and RNA Degradosome Assembly. Open Biol. (2012)
- Release Date
- 2012-04-18
- Peptides
- POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.00 Å
- Oligo State
- homo-trimer
- Ligands
- 4 x U: RNA, 5'-R(*UP*AP*AP*CP*UP*UP*UP*GP*GP)-3'(Non-covalent)
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hardwick, S.W. et al., Crystal Structure of Caulobacter Crescentus Polynucleotide Phosphorylase Reveals a Mechanism of RNA Substrate Channelling and RNA Degradosome Assembly. Open Biol. (2012)
- Release Date
- 2012-04-18
- Peptides
- POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C